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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Keywords HAS EXACT PHRASE "ENDORIBONUCLEASE"

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Search Summary

This query matches 72 Structures.

Refinements

Structure Determination Methodology

experimental (72)

Scientific Name of Source Organism

	Aspergillus oryzae (32)
	Escherichia coli (16)
	Bos taurus (8)
	Fusarium fujikuroi (4)
	Rous sarcoma virus (strain Schmidt-Ruppin) (3)
	Aspergillus phoenicis (2)
	Human immunodeficiency virus 1 (2)
	Kitasatospora aureofaciens (2)
	Bacillus intermedius (1)
	Escherichia coli K-12 (1)

More...

Taxonomy

	Eukaryota (46)
	Bacteria (21)
	Riboviria (5)
	Eukaryota (eukaryotes) (2)

Experimental Method

	X-RAY DIFFRACTION (69)
	SOLUTION NMR (3)

Polymer Entity Type

Protein (72)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (41)
	2.0 - 2.5 (21)
	2.5 - 3.0 (3)
	3.0 - 3.5 (1)

Release Date

	1985 - 1989 (3)
	1990 - 1994 (49)
	1995 - 1999 (20)

Enzyme Classification Name

	Hydrolases (63)
	Lyases (48)
	Transferases (1)

Symmetry Type

	Asymmetric (68)
	Cyclic (4)

SCOP Classification

	Alpha and beta proteins (a+b) (49)
	Alpha and beta proteins (a/b) (23)

AllSelected

1 to 25 of 72 Structures

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1BIR \| pdb_00001bir	Download File View File

RIBONUCLEASE T1, PHE 100 TO ALA MUTANT COMPLEXED WITH 2' GMP

Doumen, J., Gonciarz, M., Zegers, I., Loris, R., Wyns, L., Steyaert, J.

(1996) Protein Sci 5: 1523-1530

Released	1996-08-17
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Aspergillus oryzae
Macromolecule	RIBONUCLEASE T1 (protein)
Unique Ligands	2GP, CA

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1BU4 \| pdb_00001bu4	Download File View File

RIBONUCLEASE 1 COMPLEX WITH 2'GMP

Loris, R., Devos, S., Langhorst, U., Decanniere, K., Bouckaert, J., Maes, D., Transue, T.R., Steyaert, J.

(1999) Proteins 36: 117-134

Released	1999-02-16
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Aspergillus oryzae
Macromolecule	RIBONUCLEASE T1 (protein)
Unique Ligands	2GP, CA

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1GSP \| pdb_00001gsp	Download File View File

RIBONUCLEASE T1 COMPLEXED WITH 2',3'-CGPS, 1 DAY

Zegers, I., Wyns, L.

(1998) Nat Struct Biol 5: 280-283

Released	1998-02-25
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Aspergillus oryzae
Macromolecule	RIBONUCLEASE T1 (protein)
Unique Ligands	CA, SGP

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1KVA \| pdb_00001kva	Download File View File

E. COLI RIBONUCLEASE HI D134A MUTANT

Kashiwagi, T., Jeanteur, D., Haruki, M., Katayanagi, K., Kanaya, S., Morikawa, K.

(1996) Protein Eng 9: 857-867

Released	1997-03-12
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli
Macromolecule	RIBONUCLEASE H (protein)

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1KVB \| pdb_00001kvb	Download File View File

E. COLI RIBONUCLEASE HI D134H MUTANT

Kashiwagi, T., Jeanteur, D., Haruki, M., Katayanagi, K., Kanaya, S., Morikawa, K.

(1996) Protein Eng 9: 857-867

Released	1997-03-12
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli
Macromolecule	RIBONUCLEASE H (protein)

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1KVC \| pdb_00001kvc	Download File View File

E. COLI RIBONUCLEASE HI D134N MUTANT

Kashiwagi, T., Jeanteur, D., Haruki, M., Katayanagi, K., Kanaya, S., Morikawa, K.

(1996) Protein Eng 9: 857-867

Released	1997-03-12
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli
Macromolecule	RIBONUCLEASE H (protein)

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1RUV \| pdb_00001ruv	Download File View File

RIBONUCLEASE A-URIDINE VANADATE COMPLEX: HIGH RESOLUTION RESOLUTION X-RAY STRUCTURE (1.3 A)

Ladner, J.E., Wladkowski, B., Svensson, L.A., Sjolin, L., Gilliland, G.L.

(1997) Acta Crystallogr D Biol Crystallogr 53: 290-301

Released	1997-04-01
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Bos taurus
Macromolecule	RIBONUCLEASE A (protein)
Unique Ligands	TBU, UVC

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1VSD \| pdb_00001vsd	Download File View File

ASV INTEGRASE CORE DOMAIN WITH MG(II) COFACTOR AND HEPES LIGAND, HIGH MG CONCENTRATION FORM

Bujacz, G., Jaskolski, M., Alexandratos, J., Wlodawer, A.

(1996) Structure 4: 89-96

Released	1996-04-03
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Rous sarcoma virus (strain Schmidt-Ruppin)
Macromolecule	INTEGRASE (protein)
Unique Ligands	EPE, MG

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1VSE \| pdb_00001vse	Download File View File

ASV INTEGRASE CORE DOMAIN WITH MG(II) COFACTOR AND HEPES LIGAND, LOW MG CONCENTRATION FORM

Bujacz, G., Jaskolski, M., Alexandratos, J., Wlodawer, A.

(1996) Structure 4: 89-96

Released	1996-04-03
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Rous sarcoma virus (strain Schmidt-Ruppin)
Macromolecule	INTEGRASE (protein)
Unique Ligands	EPE

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1VSF \| pdb_00001vsf	Download File View File

ASV INTEGRASE CORE DOMAIN WITH MN(II) COFACTOR AND HEPES LIGAND, HIGH MG CONCENTRATION FORM

Bujacz, G., Jaskolski, M., Alexandratos, J., Wlodawer, A.

(1996) Structure 4: 89-96

Released	1996-04-03
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Rous sarcoma virus (strain Schmidt-Ruppin)
Macromolecule	INTEGRASE (protein)
Unique Ligands	EPE, MN

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2GSP \| pdb_00002gsp	Download File View File

RIBONUCLEASE T1/2',3'-CGPS AND 3'-GMP, 2 DAYS

Zegers, I., Wyns, L.

(1998) Nat Struct Biol 5: 280-283

Released	1998-08-12
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Aspergillus oryzae
Macromolecule	RIBONUCLEASE T1 (protein)
Unique Ligands	3GP, CA, SGP

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2RBI \| pdb_00002rbi	Download File View File

STRUCTURE OF BINASE MUTANT HIS 101 ASN

Offen, W.A., Okorokov, A.L.

(1997) Protein Eng 10: 273-278

Released	1997-03-12
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Bacillus intermedius
Macromolecule	RIBONUCLEASE (protein)

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3GSP \| pdb_00003gsp	Download File View File

RIBONUCLEASE T1 COMPLEXED WITH 2',3'-CGPS + 3'-GMP, 4 DAYS

Zegers, I., Wyns, L.

(1998) Nat Struct Biol 5: 280-283

Released	1998-08-12
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Aspergillus oryzae
Macromolecule	RIBONUCLEASE T1 (protein)
Unique Ligands	3GP, CA, SGP

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4BIR \| pdb_00004bir	Download File View File

RIBONUCLEASE T1: FREE HIS92GLN MUTANT

Doumen, J., Steyaert, J.

(1992) Biochemistry 31: 11317-11325

Released	1998-07-15
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Aspergillus oryzae
Macromolecule	GUANYL-SPECIFIC RIBONUCLEASE T1 (protein)
Unique Ligands	CA

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4GSP \| pdb_00004gsp	Download File View File

RIBONUCLEASE T1 COMPLEXED WITH 2',3'-CGPS + 3'-GMP, 7 DAYS

Zegers, I., Wyns, L.

(1998) Nat Struct Biol 5: 280-283

Released	1998-08-12
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Aspergillus oryzae
Macromolecule	RIBONUCLEASE T1 (protein)
Unique Ligands	3GP, CA, SGP

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5GSP \| pdb_00005gsp	Download File View File

RIBONUCLEASE T1/3'-GMP, 9 WEEKS

Zegers, I., Wyns, L.

(1998) Nat Struct Biol 5: 280-283

Released	1998-03-18
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Aspergillus oryzae
Macromolecule	RIBONUCLEASE T1 (protein)
Unique Ligands	3GP, CA

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6GSP \| pdb_00006gsp	Download File View File

RIBONUCLEASE T1/3'-GMP, 15 WEEKS

Zegers, I., Wyns, L.

(1998) Nat Struct Biol 5: 280-283

Released	1998-03-18
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Aspergillus oryzae
Macromolecule	RIBONUCLEASE T1 (protein)
Unique Ligands	3GP, CA

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7GSP \| pdb_00007gsp	Download File View File

RIBONUCLEASE T1/2',3'-CGPS, NON-PRODUCTIVE

Zegers, I., Wyns, L.

(1998) Nat Struct Biol 5: 280-283

Released	1998-03-18
Method	X-RAY DIFFRACTION 2 Å
Organisms	Aspergillus oryzae
Macromolecule	RIBONUCLEASE T1 (protein)
Unique Ligands	PO4, SGP

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1DET \| pdb_00001det	Download File View File

RIBONUCLEASE T1 CARBOXYMETHYLATED AT GLU 58 IN COMPLEX WITH 2'GMP

Ishikawa, K., Suzuki, E., Tanokura, M., Takahashi, K.

(1996) Biochemistry 35: 8329-8334

Released	1996-07-11
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Aspergillus oryzae
Macromolecule	RIBONUCLEASE T1 (protein)
Unique Ligands	2GP, NA

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1FUS \| pdb_00001fus	Download File View File

CRYSTAL STRUCTURES OF RIBONUCLEASE F1 OF FUSARIUM MONILIFORME IN ITS FREE FORM AND IN COMPLEX WITH 2'GMP

Katayanagi, K., Vassylyev, D.G., Ishikawa, K., Morikawa, K.

(1993) J Mol Biology 230: 979-996

Released	1993-10-31
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Fusarium fujikuroi
Macromolecule	RIBONUCLEASE F1 (protein)

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1FUT \| pdb_00001fut	Download File View File

CRYSTAL STRUCTURES OF RIBONUCLEASE F1 OF FUSARIUM MONILIFORME IN ITS FREE FORM AND IN COMPLEX WITH 2'GMP

Katayanagi, K., Vassylyev, D.G., Ishikawa, K., Morikawa, K.

(1993) J Mol Biology 230: 979-996

Released	1993-10-31
Method	X-RAY DIFFRACTION 2 Å
Organisms	Fusarium fujikuroi
Macromolecule	RIBONUCLEASE F1 (protein)
Unique Ligands	2GP

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1GOA \| pdb_00001goa	Download File View File

COOPERATIVE STABILIZATION OF ESCHERICHIA COLI RIBONUCLEASE HI BY INSERTION OF GLY-80B AND GLY-77-> ALA SUBSTITUTION

Ishikawa, K., Kimura, S., Nakamura, H., Morikawa, K., Kanaya, S.

(1993) Biochemistry 32: 7136-7142

Released	1994-01-31
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli
Macromolecule	RIBONUCLEASE H (protein)

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1GOB \| pdb_00001gob	Download File View File

COOPERATIVE STABILIZATION OF ESCHERICHIA COLI RIBONUCLEASE HI BY INSERTION OF GLY-80B AND GLY-77-> ALA SUBSTITUTION

Ishikawa, K., Kimura, S., Nakamura, H., Morikawa, K., Kanaya, S.

(1993) Biochemistry 32: 7136-7142

Released	1994-01-31
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	RIBONUCLEASE H (protein)

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1GOC \| pdb_00001goc	Download File View File

COOPERATIVE STABILIZATION OF ESCHERICHIA COLI RIBONUCLEASE HI BY INSERTION OF GLY-80B AND GLY-77-> ALA SUBSTITUTION

Ishikawa, K., Kimura, S., Nakamura, H., Morikawa, K., Kanaya, S.

(1993) Biochemistry 32: 7136-7142

Released	1994-01-31
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	RIBONUCLEASE H (protein)

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1HRH \| pdb_00001hrh	Download File View File

CRYSTAL STRUCTURE OF THE RIBONUCLEASE H DOMAIN OF HIV-1 REVERSE TRANSCRIPTASE

Davies /II, J.F., Matthews, D.A.

(1991) Science 252: 88-95

Released	1992-01-15
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	RIBONUCLEASE H (protein)

1 to 25 of 72 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1BIR | pdb_00001bir

1BU4 | pdb_00001bu4

1GSP | pdb_00001gsp

1KVA | pdb_00001kva

1KVB | pdb_00001kvb

1KVC | pdb_00001kvc

1RUV | pdb_00001ruv

1VSD | pdb_00001vsd

1VSE | pdb_00001vse

1VSF | pdb_00001vsf

2GSP | pdb_00002gsp

2RBI | pdb_00002rbi

3GSP | pdb_00003gsp

4BIR | pdb_00004bir

4GSP | pdb_00004gsp

5GSP | pdb_00005gsp

6GSP | pdb_00006gsp

7GSP | pdb_00007gsp

1DET | pdb_00001det

1FUS | pdb_00001fus

1FUT | pdb_00001fut

1GOA | pdb_00001goa

1GOB | pdb_00001gob

1GOC | pdb_00001goc

1HRH | pdb_00001hrh