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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Keywords HAS EXACT PHRASE "EXOCYTOSIS"

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Search Summary

This query matches 178 Structures.

Refinements

Structure Determination Methodology

experimental (178)

Scientific Name of Source Organism

	Rattus norvegicus (59)
	Homo sapiens (56)
	Saccharomyces cerevisiae (24)
	Mus musculus (21)
	Drosophila melanogaster (10)
	Saccharomyces cerevisiae S288C (6)
	Doryteuthis pealeii (5)
	Bos taurus (4)
	Danio rerio (2)
	Octopus bimaculoides (2)

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Taxonomy

	Eukaryota (178)
	Eukaryota (eukaryotes) (9)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (118)
	SOLUTION NMR (38)
	ELECTRON MICROSCOPY (22)

Polymer Entity Type

Protein (178)

Refinement Resolution (Å)

	1.0 - 1.5 (12)
	1.5 - 2.0 (23)
	2.0 - 2.5 (31)
	2.5 - 3.0 (27)
	3.0 - 3.5 (15)
	3.5 - 4.0 (11)
	4.0 - 4.5 (5)
	> 4.5 (16)

Release Date

	1995 - 1999 (5)
	2000 - 2004 (61)
	2005 - 2009 (38)
	2010 - 2014 (18)
	2015 - 2019 (20)
	2020 - 2024 (35)
	2025 - 2029 (1)

Enzyme Classification Name

	Hydrolases (8)
	Transferases (4)

Membrane Protein Annotation

	OPM (21)
	mpstruc (4)
	MemProtMD (2)
	PDBTM (2)

Symmetry Type

	Asymmetric (156)
	Cyclic (26)
	Dihedral (4)

SCOP Classification

	All beta proteins (59)
	Coiled coil proteins (12)
	Artifacts (38)
	Alpha and beta proteins (a/b) (15)
	All alpha proteins (24)
	Low resolution protein structures (2)
	Alpha and beta proteins (a+b) (13)
	Multi-domain proteins (alpha and beta) (6)
	Small proteins (4)

AllSelected

1 to 25 of 178 Structures

Page 1 of 8

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1HK6 \| pdb_00001hk6	Download File View File

Ral binding domain from Sec5

Mott, H.R., Nietlispach, D., Hopkins, L.J., Mirey, G., Camonis, J.H., Owen, D.

(2003) J Biological Chem 278: 17053-17059

Released	2003-03-13
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	EXOCYST COMPLEX COMPONENT SEC5 (protein)

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2CJS \| pdb_00002cjs	Download File View File

Structural Basis for a Munc13-1 Homodimer - Munc13-1 - RIM Heterodimer Switch: C2-domains as Versatile Protein-Protein Interaction Modules

Lu, J., Machius, M., Dulubova, I., Dai, H., Sudhof, T.C., Tomchick, D.R., Rizo, J.

(2006) PLoS Biol 4: E192

Released	2006-06-07
Method	X-RAY DIFFRACTION 1.78 Å
Organisms	Rattus norvegicus
Macromolecule	REGULATING SYNAPTIC MEMBRANE EXOCYTOSIS PROTEIN 2 (protein) UNC-13 HOMOLOG A (protein)
Unique Ligands	EDO, GOL, ZN

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2CJT \| pdb_00002cjt	Download File View File

Structural Basis for a Munc13-1 Homodimer - Munc13-1 - RIM Heterodimer Switch: C2-domains as Versatile Protein-Protein Interaction Modules

Lu, J., Machius, M., Dulubova, I., Dai, H., Sudhof, T.C., Tomchick, D.R., Rizo, J.

(2006) PLoS Biol 4: E192

Released	2006-06-07
Method	X-RAY DIFFRACTION 1.44 Å
Organisms	Rattus norvegicus
Macromolecule	UNC-13 HOMOLOG A (protein)
Unique Ligands	EDO, FMT

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2N1T \| pdb_00002n1t	Download File View File

Dynamic binding mode of a synaptotagmin-1-SNARE complex in solution

Brewer, K., Bacaj, T., Cavalli, A., Camilloni, C., Swarbrick, J., Liu, J., Zhou, A., Zhou, P., Barlow, N., Xu, J., Seven, A., Prinslow, E., Voleti, R., Haussinger, D., Bonvin, A., Tomchick, D., Vendruscolo, M., Graham, B., Sudhof, T., Rizo, J.

(2015) Nat Struct Mol Biol 22: 555-564

Released	2015-06-03
Method	SOLUTION NMR
Organisms	Homo sapiens Rattus norvegicus
Macromolecule	Synaptosomal-associated protein 25 (protein) Synaptotagmin-1 (protein) Syntaxin-1A (protein) Vesicle-associated membrane protein 2 (protein)

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2XHE \| pdb_00002xhe	Download File View File

Crystal structure of the Unc18-syntaxin 1 complex from Monosiga brevicollis

Burkhardt, P., Stegmann, C.M., Wahl, M.C., Fasshauer, D.

(2011) Proc Natl Acad Sci U S A 108: 15264

Released	2011-06-29
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Monosiga brevicollis
Macromolecule	SYNTAXIN1 (protein) UNC18 (protein)

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3HD7 \| pdb_00003hd7	Download File View File

HELICAL EXTENSION OF THE NEURONAL SNARE COMPLEX INTO THE MEMBRANE, spacegroup C 1 2 1

Stein, A., Weber, G., Wahl, M.C., Jahn, R.

(2009) Nature 460: 525-528

Released	2009-07-14
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Rattus norvegicus
Macromolecule	Synaptosomal-associated protein 25 (protein) Syntaxin-1A (protein) Vesicle-associated membrane protein 2 (protein)
Unique Ligands	GGG, SO4

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3HIE \| pdb_00003hie	Download File View File

Structure of the membrane-binding domain of the Sec3 subunit of the Exocyst complex

Baek, K., Dominguez, R.

(2010) J Biological Chem 285: 10424-10433

Released	2010-02-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Exocyst complex component SEC3 (protein)
Unique Ligands	PO4

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3IPD \| pdb_00003ipd	Download File View File

Helical extension of the neuronal SNARE complex into the membrane, spacegroup I 21 21 21

Stein, A., Weber, G., Wahl, M.C., Jahn, R.

(2009) Nature 460: 525-528

Released	2009-09-01
Method	X-RAY DIFFRACTION 4.8 Å
Organisms	Rattus norvegicus
Macromolecule	Synaptosomal-associated protein 25 (protein) Syntaxin-1A (protein) Vesicle-associated membrane protein 2 (protein)

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3SWH \| pdb_00003swh	Download File View File

Munc13-1, MUN domain, C-terminal module

Tomchick, D.R., Rizo, J., Li, W.

(2011) Structure 19: 1443-1455

Released	2011-11-02
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Rattus norvegicus
Macromolecule	Protein unc-13 homolog A (protein)

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4B93 \| pdb_00004b93	Download File View File

Complex of Vamp7 cytoplasmic domain with 2nd ankyrin repeat domain of Varp

Schaefer, I.B., Owen, D.J., Luzio, J.P., Evans, P.R.

(2012) Nat Struct Mol Biol 19: 1300

Released	2012-10-31
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 27 (protein) VESICLE-ASSOCIATED MEMBRANE PROTEIN 7 (protein)

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4F7Z \| pdb_00004f7z	Download File View File

Conformational dynamics of exchange protein directly activated by cAMP

White, M.A., Tsalkova, T.N., Mei, F.C., Liu, T., Woods, V.L., Cheng, X.

(2012) PLoS One 7: e49932-e49932

Released	2012-10-03
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Mus musculus
Macromolecule	Rap guanine nucleotide exchange factor 4 (protein)
Unique Ligands	GOL

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4Y21 \| pdb_00004y21	Download File View File

Crystal Structure of Munc13-1 MUN domain

Yang, X.Y., Wang, S., Sheng, Y., Zhang, M., Zou, W.J., Wu, L.J., Kang, L.J., Rizo, J., Zhang, R.G., Xu, T., Ma, C.

(2015) Nat Struct Mol Biol 22: 547-554

Released	2015-06-10
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Rattus norvegicus
Macromolecule	Protein unc-13 homolog A (protein)

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5H11 \| pdb_00005h11	Download File View File

Crystal structure of Zebrafish Sec10

Chen, J., Yamagata, A., Fukai, S.

(2017) Sci Rep 7: 40909-40909

Released	2017-02-01
Method	X-RAY DIFFRACTION 2.732 Å
Organisms	Danio rerio
Macromolecule	Uncharacterized protein (protein)
Unique Ligands	BR

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5LOB \| pdb_00005lob	Download File View File

Structure of the Ca2+-bound Rabphilin3A C2B- SNAP25 complex (C2 space group)

Ferrer-Orta, C., Verdaguer, N.

(2017) Proc Natl Acad Sci U S A 114: E5343-E5351

Released	2017-06-21
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Rattus norvegicus
Macromolecule	Rabphilin-3A (protein) Synaptosomal-associated protein 25 (protein)
Unique Ligands	CA, GOL, SO4

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5LOW \| pdb_00005low	Download File View File

Structure of the Ca2+-bound Rabphilin 3A C2B domain SNAP25 complex (P21 space group)

Verdaguer, N., Ferrer-Orta, C.

(2017) Proc Natl Acad Sci U S A 114: E5343-E5351

Released	2017-06-21
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Rattus norvegicus
Macromolecule	Rabphilin-3A (protein) Synaptosomal-associated protein 25 (protein)
Unique Ligands	CA, GOL

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5UE8 \| pdb_00005ue8	Download File View File

The crystal structure of Munc13-1 C1C2BMUN domain

Tomchick, D.R., Rizo, J., Xu, J.

(2017) Elife 6:

Released	2017-02-15
Method	X-RAY DIFFRACTION 3.35 Å
Organisms	Rattus norvegicus
Macromolecule	Protein unc-13 homolog A (protein)
Unique Ligands	CL, ZN

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5UF7 \| pdb_00005uf7	Download File View File

CRYSTAL STRUCTURE OF MUNC13-1 MUN DOMAIN

Tomchick, D.R., Rizo, J., Xu, J.

(2017) Elife 6:

Released	2017-02-15
Method	X-RAY DIFFRACTION 2.896 Å
Organisms	Rattus norvegicus
Macromolecule	Protein unc-13 homolog A (protein)

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5W5C \| pdb_00005w5c	Download File View File

Crystal structure of the primed SNARE-Complexin-Synaptotagmin-1 C2AB complex

Zhou, Q., Brunger, A.T.

(2017) Nature 548: 420-425

Released	2017-08-23
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Rattus norvegicus
Macromolecule	Unique protein chains: 6
Unique Ligands	GOL, MG

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5W5D \| pdb_00005w5d	Download File View File

Crystal structure of the primed SNARE-Complexin-Synaptotagmin-1 C2B complex

Zhou, Q., Brunger, A.T.

(2017) Nature 548: 420-425

Released	2017-08-23
Method	X-RAY DIFFRACTION 2.496 Å
Organisms	Rattus norvegicus
Macromolecule	Unique protein chains: 6
Unique Ligands	MG

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5YFP \| pdb_00005yfp	Download File View File

Cryo-EM Structure of the Exocyst Complex

Mei, K., Li, Y., Wang, S., Shao, G., Wang, J., Ding, Y., Luo, G., Yue, P., Liu, J.J., Wang, X., Dong, M.Q., Guo, W., Wang, H.W.

(2018) Nat Struct Mol Biol 25: 139-146

Released	2018-01-31
Method	ELECTRON MICROSCOPY 4.4 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 8

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6A30 \| pdb_00006a30	Download File View File

Crystal Structure of Munc13-1 MUN Domain and Synaptobrevin-2 Juxtamembrane Linker Region

Wang, S., Li, Y., Gong, J.H., Ye, S., Yang, X.F., Zhang, R.G., Ma, C.

(2019) Nat Commun 10: 69-69

Released	2019-01-30
Method	X-RAY DIFFRACTION 2.793 Å
Organisms	Rattus norvegicus
Macromolecule	Protein unc-13 homolog A (protein) Synaptobrevin-2 juxtamembrane linker peptide (protein)

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6A68 \| pdb_00006a68	Download File View File

the crystal structure of rat calcium-dependent activator protein for secretion (CAPS) DAMH domain

Zhou, H., Wei, Z.Q., Yao, D.Q., Zhang, R.G., Ma, C.

(2019) Cell Rep 26: 3347-3359.e6

Released	2019-03-13
Method	X-RAY DIFFRACTION 2.901 Å
Organisms	Rattus norvegicus
Macromolecule	Calcium-dependent secretion activator 1 (protein)
Unique Ligands	K