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235,183 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Keywords HAS EXACT PHRASE "GENE REGULATION"

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Search Summary

This query matches 1,570 Structures.

Refinements

Structure Determination Methodology

experimental (1,570)

Scientific Name of Source Organism

	Homo sapiens (1,026)
	synthetic construct (125)
	Arabidopsis thaliana (68)
	Xenopus laevis (67)
	Mus musculus (55)
	Escherichia coli (48)
	Saccharomyces cerevisiae (44)
	Saccharomyces cerevisiae S288C (34)
	Drosophila melanogaster (30)
	Danio rerio (19)

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Taxonomy

	Eukaryota (1,306)
	Bacteria (223)
	other sequences (126)
	Duplodnaviria (37)
	Archaea (21)
	Eukaryota (eukaryotes) (12)
	Riboviria (5)
	unclassified sequences (3)
	Monodnaviria (1)
	Riboviria (RNA viruses and viroids) (1)

Experimental Method

	X-RAY DIFFRACTION (1,242)
	ELECTRON MICROSCOPY (211)
	SOLUTION NMR (117)

Polymer Entity Type

	Protein (1,570)
	DNA (215)
	RNA (47)
	NA-hybrid (2)

Refinement Resolution (Å)

	1.0 - 1.5 (126)
	1.5 - 2.0 (571)
	2.0 - 2.5 (296)
	2.5 - 3.0 (202)
	3.0 - 3.5 (138)
	3.5 - 4.0 (58)
	4.0 - 4.5 (28)
	> 4.5 (34)

Release Date

	1985 - 1989 (1)
	1990 - 1994 (3)
	1995 - 1999 (44)
	2000 - 2004 (122)
	2005 - 2009 (174)
	2010 - 2014 (108)
	2015 - 2019 (495)
	2020 - 2024 (587)
	2025 - 2029 (36)

Enzyme Classification Name

	Transferases (207)
	Hydrolases (143)
	Oxidoreductases (31)
	Lyases (6)
	Ligases (3)
	Isomerases (1)

Symmetry Type

	Asymmetric (1,257)
	Cyclic (325)
	Dihedral (22)
	Tetrahedral (2)
	Octahedral (1)

SCOP Classification

	All alpha proteins (256)
	Artifacts (132)
	All beta proteins (98)
	Alpha and beta proteins (a/b) (87)
	Alpha and beta proteins (a+b) (53)
	Small proteins (16)
	Coiled coil proteins (5)
	Membrane and cell surface proteins and peptides (2)
	Peptides (4)
	Designed proteins (1)

AllSelected

1 to 25 of 1,570 Structures

Page 1 of 63

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1B00 \| pdb_00001b00	Download File View File

PHOB RECEIVER DOMAIN FROM ESCHERICHIA COLI

Sola, M., Gomis-Ruth, F.X., Serrano, L., Gonzalez, A., Coll, M.

(1999) J Mol Biology 285: 675-687

Released	1999-11-19
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Escherichia coli
Macromolecule	PHOSPHATE REGULON TRANSCRIPTIONAL REGULATORY PROTEIN PHOB (protein)

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1BUO \| pdb_00001buo	Download File View File

BTB DOMAIN FROM PLZF

Ahmad, K.F., Engel, C.K., Prive, G.G.

(1998) Proc Natl Acad Sci U S A 95: 12123-12128

Released	1998-10-14
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (PROMYELOCYTIC LEUKEMIA ZINC FINGER PROTEIN PLZF) (protein)

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1BYM \| pdb_00001bym	Download File View File

SOLUTION STRUCTURES OF THE C-TERMINAL DOMAIN OF DIPHTHERIA TOXIN REPRESSOR

Wang, G., Wylie, G.P., Twigg, P.D., Caspar, D.L.D., Murphy, J.R., Logan, T.M.

(1999) Proc Natl Acad Sci U S A 96: 6119-6124

Released	1998-10-21
Method	SOLUTION NMR
Organisms	Corynebacterium diphtheriae
Macromolecule	PROTEIN (DIPHTHERIA TOXIN REPRESSOR) (protein)

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1C26 \| pdb_00001c26	Download File View File

CRYSTAL STRUCTURE OF P53 TETRAMERIZATION DOMAIN

Jeffrey, P.D., Gorina, S., Pavletich, N.P.

(1995) Science 267: 1498-1502

Released	1999-07-27
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	P53 TUMOR SUPPRESSOR (protein)

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1C94 \| pdb_00001c94	Download File View File

REVERSING THE SEQUENCE OF THE GCN4 LEUCINE ZIPPER DOES NOT AFFECT ITS FOLD.

Mittl, P.R.E., Deillon, C.A., Sargent, D., Liu, N., Klauser, S., Thomas, R.M., Gutte, B., Gruetter, M.G.

(2000) Proc Natl Acad Sci U S A 97: 2562-2566

Released	2000-03-22
Method	X-RAY DIFFRACTION 2.08 Å
Macromolecule	RETRO-GCN4 LEUCINE ZIPPER (protein)

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1CL3 \| pdb_00001cl3	Download File View File

MOLECULAR INSIGHTS INTO PEBP2/CBF-SMMHC ASSOCIATED ACUTE LEUKEMIA REVEALED FROM THE THREE-DIMENSIONAL STRUCTURE OF PEBP2/CBF BETA

Goger, M., Gupta, V., Kim, W.Y., Shigesada, K., Ito, Y., Werner, M.H.

(1999) Nat Struct Biol 6: 620-623

Released	2000-01-01
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	POLYOMAVIRUS ENHANCER BINDING PROTEIN 2 (protein)

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1CO1 \| pdb_00001co1	Download File View File

FOLD OF THE CBFA

Berardi, M.J., Bushweller, J.H.

(1999) Structure 7: 1247-1256

Released	2000-06-07
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	CORE BINDING FACTOR ALPHA (protein)

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1COK \| pdb_00001cok	Download File View File

STRUCTURE OF THE C-TERMINAL DOMAIN OF P73

Chi, S.-W., Ayed, A., Arrowsmith, C.H.

(1999) EMBO J 18: 4438-4445

Released	1999-08-17
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	PROTEIN (SECOND SPLICE VARIANT P73) (protein)

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1CPZ \| pdb_00001cpz	Download File View File

COPPER CHAPERONE OF ENTEROCOCCUS HIRAE (APO-FORM)

Wimmer, R., Herrmann, T., Solioz, M., Wuethrich, K.

(1999) J Biological Chem 274: 22597-22603

Released	1999-05-11
Method	SOLUTION NMR
Organisms	Enterococcus hirae
Macromolecule	Copper chaperone (protein)

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1CZD \| pdb_00001czd	Download File View File

CRYSTAL STRUCTURE OF THE PROCESSIVITY CLAMP GP45 FROM BACTERIOPHAGE T4

Moarefi, I., Jeruzalmi, D., Turner, J., O'Donnell, M., Kuriyan, J.

(2000) J Mol Biology 296: 1215-1223

Released	2000-03-03
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Tequatrovirus T4
Macromolecule	DNA POLYMERASE ACCESSORY PROTEIN G45 (protein)

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1D1N \| pdb_00001d1n	Download File View File

SOLUTION STRUCTURE OF THE FMET-TRNAFMET BINDING DOMAIN OF BECILLUS STEAROTHERMOPHILLUS TRANSLATION INITIATION FACTOR IF2

Meunier, S., Spurio, S., Czisch, M., Wechselberger, R., Gueunneugues, M.

(2000) EMBO J 19: 1918-1926

Released	2000-09-20
Method	SOLUTION NMR
Organisms	Geobacillus stearothermophilus
Macromolecule	INITIATION FACTOR 2 (protein)

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1D1Z \| pdb_00001d1z	Download File View File

CRYSTAL STRUCTURE OF THE XLP PROTEIN SAP

Poy, F., Yaffe, M.B., Sayos, J., Saxena, K., Eck, M.J.

(1999) Mol Cell 4: 555-561

Released	1999-10-13
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Homo sapiens
Macromolecule	SAP SH2 DOMAIN (protein)
Unique Ligands	SO4

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1D5V \| pdb_00001d5v	Download File View File

SOLUTION STRUCTURE OF THE FORKHEAD DOMAIN OF THE ADIPOCYTE-TRANSCRIPTION FACTOR FREAC-11 (S12)

van Dongen, M.J.P., Cederberg, A., Carlsson, P., Enerback, S., Wikstrom, M.

(2000) J Mol Biology 296: 351-359

Released	2000-10-11
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	S12 TRANSCRIPTION FACTOR (FKH-14) (protein)

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1D5W \| pdb_00001d5w	Download File View File

PHOSPHORYLATED FIXJ RECEIVER DOMAIN

Birck, C., Mourey, L., Gouet, P., Fabry, B., Schumacher, J., Rousseau, P., Kahn, D., Samama, J.P.

(1999) Structure 7: 1505-1515

Released	2000-10-11
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Sinorhizobium meliloti
Macromolecule	TRANSCRIPTIONAL REGULATORY PROTEIN FIXJ (protein)
Unique Ligands	SO4

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1D7Q \| pdb_00001d7q	Download File View File

HUMAN TRANSLATION INITIATION FACTOR EIF1A

Battiste, J.L., Pestova, T.V., Hellen, C.U.T., Wagner, G.

(2000) Mol Cell 5: 109-119

Released	2000-03-17
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	PROTEIN (N-TERMINAL HISTIDINE TAG) (protein) TRANSLATION INITIATION FACTOR 1A (protein)

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1D8J \| pdb_00001d8j	Download File View File

SOLUTION STRUCTURE OF THE CENTRAL CORE DOMAIN OF TFIIE BETA

Okuda, M., Watanabe, Y., Okamura, H., Hanaoka, F., Ohkuma, Y., Nishimura, Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2000) EMBO J 19: 1346-1356

Released	2000-04-26
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	GENERAL TRANSCRIPTION FACTOR TFIIE-BETA (protein)

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1D8K \| pdb_00001d8k	Download File View File

SOLUTION STRUCTURE OF THE CENTRAL CORE DOMAIN OF TFIIE BETA

Okuda, M., Watanabe, Y., Okamura, H., Hanaoka, F., Ohkuma, Y., Nishimura, Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2000) EMBO J 19: 1346-1356

Released	2000-04-26
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	GENERAL TRANSCRIPTION FACTOR TFIIE-BETA (protein)

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1D8L \| pdb_00001d8l	Download File View File

E. COLI HOLLIDAY JUNCTION BINDING PROTEIN RUVA NH2 REGION LACKING DOMAIN III

Nishino, T., Iwasaki, H., Kataoka, M., Ariyoshi, M., Fujita, T., Shinagawa, H., Morikawa, K.

(2000) J Mol Biology 298: 407-416

Released	2000-05-03
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	PROTEIN (HOLLIDAY JUNCTION DNA HELICASE RUVA) (protein)

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1D9N \| pdb_00001d9n	Download File View File

SOLUTION STRUCTURE OF THE METHYL-CPG-BINDING DOMAIN OF THE METHYLATION-DEPENDENT TRANSCRIPTIONAL REPRESSOR MBD1/PCM1

Ohki, I., Shimotake, N., Fujita, N., Nakao, M., Shirakawa, M.

(1999) EMBO J 18: 6653-6661

Released	2000-10-28
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	METHYL-CPG-BINDING PROTEIN MBD1 (protein)

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1D9X \| pdb_00001d9x	Download File View File

CRYSTAL STRUCTURE OF THE DNA REPAIR PROTEIN UVRB

Theis, K., Chen, P.J., Skorvaga, M., Van Houten, B., Kisker, C.

(1999) EMBO J 18: 6899-6907

Released	2000-05-03
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	[Bacillus] caldotenax
Macromolecule	EXCINUCLEASE UVRABC COMPONENT UVRB (protein)
Unique Ligands	ZN

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1D9Z \| pdb_00001d9z	Download File View File

CRYSTAL STRUCTURE OF THE DNA REPAIR PROTEIN UVRB IN COMPLEX WITH ATP

Theis, K., Chen, P.J., Skorvaga, M., Van Houten, B., Kisker, C.

(1999) EMBO J 18: 6899-6907

Released	2000-05-03
Method	X-RAY DIFFRACTION 3.15 Å
Organisms	[Bacillus] caldotenax
Macromolecule	EXCINUCLEASE UVRABC COMPONENT UVRB (protein)
Unique Ligands	ATP, MG, ZN