RCSB PDB: Search

1A31 \| pdb_00001a31	Download File View File

HUMAN RECONSTITUTED DNA TOPOISOMERASE I IN COVALENT COMPLEX WITH A 22 BASE PAIR DNA DUPLEX

Redinbo, M.R., Stewart, L., Kuhn, P., Champoux, J.J., Hol, W.G.J.

(1998) Science 279: 1504-1513

Released	1998-08-28
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (TOPOISOMERASE I) (protein) DNA (5'-D(APAPAPAPAPGPAPCP5IUP5IUTPGPAPAPAPAPAP5IUP5IUP5IUP5IUPT)-3') (nucleic acid) DNA (5'-D(APAPAPAPAPTP5IUP5IUP5IUP5IUPCPAPAPAPGPTPCPTPTPTPTPT)-3') (nucleic acid)

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1A35 \| pdb_00001a35	Download File View File

HUMAN TOPOISOMERASE I/DNA COMPLEX

Redinbo, M.R., Stewart, L., Kuhn, P., Champoux, J.J., Hol, W.G.

(1998) Science 279: 1504-1513

Released	1998-08-28
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (DNA TOPOISOMERASE I) (protein) DNA (5'-D(APAPAPAPAPGPAPCPTPTPAPGPAPAPAPAPAP(BRU)P(BRU)PTPTPT)-3') (nucleic acid) DNA (5'-D(APAPAPAPAPTP+UP+UP+UP+UPCP+UPAPAPGPTPCPTPTPTP+ UPT)-3') (nucleic acid)

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1A36 \| pdb_00001a36	Download File View File

TOPOISOMERASE I/DNA COMPLEX

Stewart, L., Redinbo, M.R., Qiu, X., Champoux, J.J., Hol, W.G.J.

(1998) Science 279: 1534-1541

Released	1998-08-12
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	TOPOISOMERASE I (protein) DNA (5'-D(APAPAPAPAPGPAPCPTPTPAPGPAPAPAPAPA PTPTPTPTPT)- 3') (nucleic acid) DNA (5'-D(APAPAPAPAPTPTPTPTPTPCPTPAPAPGPTPC PTPTPTPTPT)- 3') (nucleic acid)

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1EJ9 \| pdb_00001ej9	Download File View File

CRYSTAL STRUCTURE OF HUMAN TOPOISOMERASE I DNA COMPLEX

Redinbo, M.R., Champoux, J.J., Hol, W.G.

(2000) Biochemistry 39: 6832-6840

Released	2000-08-03
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	DNA TOPOISOMERASE I (protein) DNA (5'-D(CAPAPAPAPAPGPAPCPTPCPAPGPAPAPAPAPAPTPTPTPTPT)-3') (nucleic acid) DNA (5'-D(CAPAPAPAPAPTPTPTPTPTPCPTPGPAPGPTPCPTPTPTPTPT)-3') (nucleic acid)

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1I7D \| pdb_00001i7d	Download File View File

NONCOVALENT COMPLEX OF E.COLI DNA TOPOISOMERASE III WITH AN 8-BASE SINGLE-STRANDED DNA OLIGONUCLEOTIDE

Changela, A., DiGate, R.J., Mondragon, A.

(2001) Nature 411: 1077-1081

Released	2001-06-29
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Escherichia coli
Macromolecule	DNA TOPOISOMERASE III (protein) 5'-D(CPGPCPAPAPCPTPT)-3' (nucleic acid)
Unique Ligands	CL, SO4

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1K4S \| pdb_00001k4s	Download File View File

HUMAN DNA TOPOISOMERASE I IN COVALENT COMPLEX WITH A 22 BASE PAIR DNA DUPLEX

Staker, B.L., Hjerrild, K., Feese, M.D., Behnke, C.A., Burgin Jr., A.B., Stewart, L.J.

(2002) Proc Natl Acad Sci U S A 99: 15387-15392

Released	2002-12-04
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens
Macromolecule	DNA topoisomerase I (protein) 5'-D((SPT)PGPAPAPAPAPAP(5IU)P(5IU)P(5IU)P(5IU)PT)-3' (nucleic acid) 5'-D(APAPAPAPAPGPAPCP(5IU)P(5IU))-3' (nucleic acid) 5'-D(APAPAPAPAPTP(IDO)UP(IDO)UP(IDO)UP(IDO)UPCPAPAPAPGP(IDO)UPCP(IDO)UP(IDO)UP(IDO)UP(IDO)UPT)-3' (nucleic acid)

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1K4T \| pdb_00001k4t	Download File View File

HUMAN DNA TOPOISOMERASE I (70 KDA) IN COMPLEX WITH THE POISON TOPOTECAN AND COVALENT COMPLEX WITH A 22 BASE PAIR DNA DUPLEX

Staker, B.L., Hjerrild, K., Feese, M.D., Behnke, C.A., Burgin Jr., A.B., Stewart, L.J.

(2002) Proc Natl Acad Sci U S A 99: 15387-15392

Released	2002-12-04
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	DNA topoisomerase I (protein) 5'-D((TGP)PGPAPAPAPAPAPTPTPTPTPT)-3' (nucleic acid) 5'-D(APAPAPAPAPGPAPCPTPT)-3' (nucleic acid) 5'-D(APAPAPAPAPTPTPTPTPTPCPCPAPAPGPTPCPTPTPTPTPT)-3' (nucleic acid)
Unique Ligands	HG, PG4, TTC, TTG

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1LPQ \| pdb_00001lpq	Download File View File

Human DNA Topoisomerase I (70 Kda) In Non-Covalent Complex With A 22 Base Pair DNA Duplex Containing an 8-oxoG Lesion

Lesher, D.T., Pommier, Y., Stewart, L., Redinbo, M.R.

(2002) Proc Natl Acad Sci U S A 99: 12102-12107

Released	2002-08-16
Method	X-RAY DIFFRACTION 3.14 Å
Organisms	Homo sapiens
Macromolecule	DNA topoisomerase I (protein) 5'-D(APAPAPAPAPGPAPCPTPTP(8OG)PGPAPAPAPAPAPTPTPTPTPT)-3' (nucleic acid) 5'-D(APAPAPAPAPTPTPTPTPTPCPCPAPAPGPTPCPTPTPTPTPT)-3' (nucleic acid)

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1NH3 \| pdb_00001nh3	Download File View File

Human Topoisomerase I Ara-C Complex

Chrencik, J.E., Burgin, A.B., Pommier, Y., Stewart, L., Redinbo, M.R.

(2003) J Biological Chem 278: 12461-12466

Released	2003-03-04
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens
Macromolecule	DNA topoisomerase I (protein) 5'-D((GNG)PGPAPAPAPAPAPUPUPUPUPT)-3' (nucleic acid) 5'-D(APAPAPAPAPGPAPCPUP(UBB))-3' (nucleic acid) 5'-D(APAPAPAPAPTPUPUPUPUPCP(CAR)PAPAPGPUPCPUPUPUPUPT)-3' (hybrid)

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1R49 \| pdb_00001r49	Download File View File

Human topoisomerase I (Topo70) double mutant K532R/Y723F

Interthal, H., Quigley, P.M., Hol, W.G., Champoux, J.J.

(2004) J Biological Chem 279: 2984-2992

Released	2003-12-16
Method	X-RAY DIFFRACTION 3.13 Å
Organisms	Homo sapiens
Macromolecule	DNA topoisomerase I (protein) 5'-D(APAPAPAPAPGPAPCPTPTPAPGPAPAPAPAPAPTPTPTPTPT)-3' (nucleic acid) 5'-D(PAPAPAPAPAPTPTPTPTPTPCPTPAPAPGPTPCPTPTPTPTPT)-3' (nucleic acid)

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1RR8 \| pdb_00001rr8	Download File View File

Structural Mechanisms of Camptothecin Resistance by Mutations in Human Topoisomerase I

Chrencik, J.E., Staker, B.L., Burgin, A.B., Stewart, L., Redinbo, M.R.

(2004) J Mol Biology 339: 773-784

Released	2004-07-06
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	DNA topoisomerase I (protein) 5'-D(APAPAPAPAPGPAPCPTPTGPGPAPAPAPAPAPTPTPTPTPT)-3' (nucleic acid) 5'-D(APAPAPAPAPTPTPTPTPTPCPCPAPAPGPTPCPTPTPTPTPT)-3' (nucleic acid)
Unique Ligands	TTC, TTG

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1RRJ \| pdb_00001rrj	Download File View File

Structural Mechanisms of Camptothecin Resistance by Mutations in Human Topoisomerase I

Chrencik, J.E., Staker, B.L., Burgin, A.B., Stewart, L., Redinbo, M.R.

(2004) J Mol Biology 339: 773-784

Released	2004-07-06
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	DNA topoisomerase I (protein) 5'-D(APAPAPAPAPGPAPCPTPTGPGPAPAPAPAPAPTPTPTPTPT)-3' (nucleic acid) 5'-D(APAPAPAPAPTPTPTPTPTPCPCPAPAPGPTPCPTPTPTPTPT)-3' (nucleic acid)
Unique Ligands	TTC, TTG

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1SC7 \| pdb_00001sc7	Download File View File

Human DNA Topoisomerase I (70 Kda) In Complex With The Indenoisoquinoline MJ-II-38 and Covalent Complex With A 22 Base Pair DNA Duplex

Staker, B.L., Feese, M.D., Cushman, M., Pommier, Y., Zembower, D., Stewart, L., Burgin, A.B.

(2005) J Med Chem 48: 2336-2345

Released	2005-04-19
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	DNA topoisomerase I (protein) 5'-D((TGP)PGPAPAPAPAPAPTPTPTPTPT)-3' (nucleic acid) 5'-D(APAPAPAPAPGPAPCPTPT)-3' (nucleic acid) 5'-D(APAPAPAPAPTPTPTPTPTPCPCPAPAPGPTPCPTPTPTPTPT)-3' (nucleic acid)
Unique Ligands	M38, PG4

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1SEU \| pdb_00001seu	Download File View File

Human DNA Topoisomerase I (70 Kda) In Complex With The Indolocarbazole SA315F and Covalent Complex With A 22 Base Pair DNA Duplex

Staker, B.L., Feese, M.D., Cushman, M., Pommier, Y., Zembower, D., Stewart, L., Burgin, A.B.

(2005) J Med Chem 48: 2336-2345

Released	2005-04-19
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	DNA topoisomerase I (protein) 5'-D((TGP)PGPAPAPAPAPAPTPTPTPTPT)-3' (nucleic acid) 5'-D(APAPAPAPAPGPAPCPTPT)-3' (nucleic acid) 5'-D(APAPAPAPAPTPTPTPTPTPCPCPAPAPGPTPCPTPTPTPTPT)-3' (nucleic acid)
Unique Ligands	SA3

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1T8I \| pdb_00001t8i	Download File View File

Human DNA Topoisomerase I (70 Kda) In Complex With The Poison Camptothecin and Covalent Complex With A 22 Base Pair DNA Duplex

Staker, B.L., Feese, M.D., Cushman, M., Pommier, Y., Zembower, D., Stewart, L., Burgin, A.B.

(2005) J Med Chem 48: 2336-2345

Released	2005-05-31
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	DNA topoisomerase I (protein) 5'-D((TGP)PGPAPAPAPAPAPTPTPTPTPT)-3' (nucleic acid) 5'-D(APAPAPAPAPGPAPCPTPT)-3' (nucleic acid) 5'-D(APAPAPAPAPTPTPTPTPTPCPCPAPAPGPTPCPTPTPTPTPT)-3' (nucleic acid)
Unique Ligands	EHD

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1TL8 \| pdb_00001tl8	Download File View File

Human DNA topoisomerase I (70 kDa) in complex with the indenoisoquinoline AI-III-52 and covalent complex with a 22 base pair DNA duplex

Ioanoviciu, A., Antony, S., Pommier, Y., Staker, B.L., Stewart, L., Cushman, M.

(2005) J Med Chem 48: 4803-4814

Released	2005-06-21
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens
Macromolecule	DNA topoisomerase I (protein) 5'-D((TPC)PGPAPAPAPAPAPTPTPTPTPT)-3' (nucleic acid) 5'-D(APAPAPAPAPGPAPCPTPT)-3' (nucleic acid) 5'-D(APAPAPAPAPTPTPTPTPTPCPGPAPAPGPTPCPTPTPTPTPT)-3' (nucleic acid)
Unique Ligands	AI3

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2B9S \| pdb_00002b9s	Download File View File

Crystal Structure of heterodimeric L. donovani topoisomerase I-vanadate-DNA complex

Davies, D.R., Hol, W.G.J.

(2006) J Mol Biology 357: 1202-1210

Released	2006-01-17
Method	X-RAY DIFFRACTION 2.27 Å
Organisms	Leishmania donovani
Macromolecule	DNA topoisomerase I-like protein (protein) topoisomerase I-like protein (protein) 5'-D(APAPAPAPAPGPAPCPTPT)-3' (nucleic acid) 5'-D(APAPAPAPAPTPTPTPTPTPCPTPAPAPGPTPCPTPTPTPTPT)-3' (nucleic acid) 5'-D(APGPAPAPAPAPAPTPTPTPTPT)-3' (nucleic acid)
Unique Ligands	VO4

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2H7F \| pdb_00002h7f	Download File View File

Structure of variola topoisomerase covalently bound to DNA

Perry, K., Hwang, Y., Bushman, F.D., Van Duyne, G.D.

(2006) Mol Cell 23: 343-354

Released	2006-08-15
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Variola virus
Macromolecule	DNA topoisomerase 1 (protein) 5'-D(TPAPAPTPAPAPGPGPGPCPGPAPCPA)-3' (nucleic acid) 5'-D(TPTPGPTPCPGPCPCPCPTP*T)-3' (nucleic acid)

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2H7G \| pdb_00002h7g	Download File View File

Structure of variola topoisomerase non-covalently bound to DNA

Perry, K., Hwang, Y., Bushman, F.D., Van Duyne, G.D.

(2006) Mol Cell 23: 343-354

Released	2006-08-15
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Variola virus
Macromolecule	DNA topoisomerase 1 (protein) 5'-D(TPAPAPTPAPAPGPGPGPCPGPAPCPA)-3' (nucleic acid) 5'-D(TPTPGPTPCPGPCPCPCPTPTPA)-3' (nucleic acid)

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2O19 \| pdb_00002o19	Download File View File

Structure of E. coli topoisomersae III in complex with an 8-base single stranded oligonucleotide. Frozen in glycerol at pH 5.5

Changela, A., DiGate, R., Mondragon, A.

(2007) J Mol Biology 368: 105-118

Released	2007-04-03
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Escherichia coli
Macromolecule	DNA topoisomerase 3 (protein) 5'-D(CPGPCPAPAPCPTPT)-3' (nucleic acid)
Unique Ligands	ACY, CL

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2O54 \| pdb_00002o54	Download File View File

Structure of E. coli topoisomerase III in complex with an 8-base single stranded oligonucleotide. Frozen in glycerol at pH 7.0

Changela, A., Digate, R.J., Mondragon, A.

(2007) J Mol Biology 368: 105-118

Released	2007-04-03
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	DNA topoisomerase 3 (protein) 5'-D(CPGPCPAPAPCPTPT)-3' (nucleic acid)
Unique Ligands	ACY, CL

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2O59 \| pdb_00002o59	Download File View File

Structure of E. coli topoisomerase III in complex with an 8-base single stranded oligonucleotide. Frozen in glycerol pH 8.0

Changela, A., DiGate, R.J., Mondragon, A.

(2007) J Mol Biology 368: 105-118

Released	2007-04-03
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	DNA topoisomerase 3 (protein) 5'-D(CPGPCPAPAPCPTPT)-3' (nucleic acid)
Unique Ligands	ACY, CL

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2O5C \| pdb_00002o5c	Download File View File

Structure of E. coli topoisomerase III in complex with an 8-base single stranded oligonucleotide. Frozen in glucose pH 5.5

Changela, A., DiGate, R.J., Mondragon, A.

(2007) J Mol Biology 368: 105-118

Released	2007-04-03
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Escherichia coli
Macromolecule	DNA topoisomerase 3 (protein) 5'-D(CPGPCPAPAPCPTPT)-3' (nucleic acid)
Unique Ligands	CL, TDR

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2O5E \| pdb_00002o5e	Download File View File

Structure of E. coli topoisomerase III in complex with an 8-base single stranded oligonucleotide. Frozen in glucose pH 7.0

Changela, A., DiGate, R.J., Mondragon, A.

(2007) J Mol Biology 368: 105-118

Released	2007-04-03
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	DNA topoisomerase 3 (protein) 5'-D(CPGPCPAPAPCPTPT)-3' (nucleic acid)
Unique Ligands	CL, TDR

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2RGR \| pdb_00002rgr	Download File View File

Topoisomerase IIA bound to G-segment DNA

Dong, K.C., Berger, J.M.

(2007) Nature 450: 1201-1205

Released	2007-12-25
Method	X-RAY DIFFRACTION 3 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	DNA topoisomerase 2 (protein) DNA (nucleic acid)
Unique Ligands	MG

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1A31 | pdb_00001a31

1A35 | pdb_00001a35

1A36 | pdb_00001a36

1EJ9 | pdb_00001ej9

1I7D | pdb_00001i7d

1K4S | pdb_00001k4s

1K4T | pdb_00001k4t

1LPQ | pdb_00001lpq

1NH3 | pdb_00001nh3

1R49 | pdb_00001r49

1RR8 | pdb_00001rr8

1RRJ | pdb_00001rrj

1SC7 | pdb_00001sc7

1SEU | pdb_00001seu

1T8I | pdb_00001t8i

1TL8 | pdb_00001tl8

2B9S | pdb_00002b9s

2H7F | pdb_00002h7f

2H7G | pdb_00002h7g

2O19 | pdb_00002o19

2O54 | pdb_00002o54

2O59 | pdb_00002o59

2O5C | pdb_00002o5c

2O5E | pdb_00002o5e

2RGR | pdb_00002rgr