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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Keywords HAS EXACT PHRASE "LYASE, TRANSFERASE/DNA"

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Search Summary

This query matches 2 Structures.

Refinements

Structure Determination Methodology

experimental (2)

Scientific Name of Source Organism

Homo sapiens (2)

Taxonomy

Eukaryota (2)

Experimental Method

X-RAY DIFFRACTION (2)

Polymer Entity Type

	DNA (2)
	Protein (2)

Refinement Resolution (Å)

2.0 - 2.5 (2)

Release Date

2010 - 2014 (2)

Enzyme Classification Name

	Lyases (2)
	Transferases (2)

Symmetry Type

Asymmetric (2)

SCOP Classification

	All alpha proteins (2)
	Alpha and beta proteins (a+b) (2)

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3TFR	Download File View File

Ternary complex structure of DNA polymerase beta with a gapped DNA substrate and a, b dAMP(CF2)PP in the active site

Chamberlain, B.T., Batra, V.K., Beard, W.A., Kadina, A.P., Shock, D.D., Kashemirov, B.A., McKenna, C.E., Goodman, M.F., Wilson, S.H.

(2012) Chembiochem 13: 528-530

Released	2012-03-21
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase beta (protein) DNA (5'-D(CPCPGPAPCPTPGPCPGPCPAPTPCPAPGPC)-3') (nucleic acid) DNA (5'-D(GPCPTPGPAPTPGPCPGPC)-3') (nucleic acid) DNA (5'-D(PGPTPCPGP*G)-3') (nucleic acid)
Unique Ligands	CL, F3A, MG, NA

Explore in 3D

3TFS	Download File View File

Ternary complex structure of DNA polymerase beta with a gapped DNA substrate and a, b dAMP(CFH)PP in the active site: Stereoselective binding of (S) isomer

Chamberlain, B.T., Batra, V.K., Beard, W.A., Kadina, A.P., Shock, D.D., Kashemirov, B.A., McKenna, C.E., Goodman, M.F., Wilson, S.H.

(2012) Chembiochem 13: 528-530

Released	2012-03-21
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase beta (protein) DNA (5'-D(CPCPGPAPCPTPGPCPGPCPAPTPCPAPGPC)-3') (nucleic acid) DNA (5'-D(GPCPTPGPAPTPGPCPGPC)-3') (nucleic acid) DNA (5'-D(PGPTPCPGP*G)-3') (nucleic acid)
Unique Ligands	CL, FHA, MG, NA

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

3TFR

Ternary complex structure of DNA polymerase beta with a gapped DNA substrate and a, b dAMP(CF2)PP in the active site

3TFS

Ternary complex structure of DNA polymerase beta with a gapped DNA substrate and a, b dAMP(CFH)PP in the active site: Stereoselective binding of (S) isomer