RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

234,785 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Space Group = "P 1"

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 15 Structures.

Refinements

Structure Determination Methodology

experimental (15)

Scientific Name of Source Organism

	Homo sapiens (9)
	Escherichia coli K-12 (5)
	Caenorhabditis elegans (1)
	Chlamydia trachomatis L2/434/Bu (1)

Taxonomy

	Eukaryota (9)
	Bacteria (6)

Experimental Method

X-RAY DIFFRACTION (15)

Polymer Entity Type

Protein (15)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (5)
	2.0 - 2.5 (2)
	2.5 - 3.0 (5)
	3.0 - 3.5 (2)

Release Date

	2005 - 2009 (6)
	2010 - 2014 (2)
	2015 - 2019 (5)
	2020 - 2024 (2)

Enzyme Classification Name

	Hydrolases (6)
	Transferases (1)

Symmetry Type

	Asymmetric (9)
	Cyclic (6)

SCOP Classification

	All beta proteins (6)
	All alpha proteins (3)
	Small proteins (1)
	Artifacts (1)

AllSelected

1 to 15 of 15 Structures

Page 1 of 1

Sort by

Explore in 3D

1Z78 \| pdb_00001z78	Download File View File

Crystal Structure of the Thrombospondin-1 N-terminal domain

Tan, K., Wang, J., Lawler, J.

(2006) Structure 14: 33-42

Released	2006-01-17
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Thrombospondin 1 (protein)

Explore in 3D

1ZA4 \| pdb_00001za4	Download File View File

Crystal Structure of the Thrombospondin-1 N-terminal Domain in Complex with Arixtra

Tan, K., Wang, J.H., Lawler, J.

(2006) Structure 14: 33-42

Released	2006-01-24
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Thrombospondin 1 (protein)
Unique Ligands	SGN, SO4

Explore in 3D

2ERF \| pdb_00002erf	Download File View File

Crystal Structure of the Thrombospondin-1 N-terminal Domain at 1.45A Resolution

Tan, K., Wang, J., Lawler, J.

(2006) Structure 14: 33-42

Released	2006-01-17
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Homo sapiens
Macromolecule	Thrombospondin-1 (protein)

Explore in 3D

2ES3 \| pdb_00002es3	Download File View File

Crystal Structure of Thrombospondin-1 N-terminal Domain in P1 Form at 1.85A Resolution

Tan, K., Wang, J., Lawler, J.

(2008) J Biological Chem 283: 3932-3941

Released	2006-10-31
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	Thrombospondin-1 (protein)

Explore in 3D

2OUH \| pdb_00002ouh	Download File View File

Crystal structure of the Thrombospondin-1 N-terminal domain in complex with fractionated Heparin DP10

Tan, K., Joachimiak, A., Wang, J., Lawler, J.

(2008) J Biological Chem 283: 3932-3941

Released	2008-01-08
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Thrombospondin-1 (protein)
Unique Ligands	SO4

Explore in 3D

2OUJ \| pdb_00002ouj	Download File View File

The crystal structure of the Thrombospondin-1 N-terminal domain in complex with fractionated Heparin DP8

Tan, K., Joachimiak, A., Wang, J., Lawler, J.

(2008) J Biological Chem 283: 3932-3941

Released	2008-01-08
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Thrombospondin-1 (protein)

Explore in 3D

3R6B \| pdb_00003r6b	Download File View File

Crystal Structure of Thrombospondin-1 TSR Domains 2 and 3

Page, R.C., Klenotic, P.A., Misra, S., Silverstein, R.L.

(2011) Protein Expr Purif 80: 253-259

Released	2011-08-10
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Thrombospondin-1 (protein)
Unique Ligands	EDO

Explore in 3D

4QL6 \| pdb_00004ql6	Download File View File

Structure of C. trachomatis CT441

Kohlmann, F., Hilgenfeld, R., Hansen, G.

(2015) J Bacteriol 197: 211-218

Released	2014-11-05
Method	X-RAY DIFFRACTION 2.97 Å
Organisms	Chlamydia trachomatis L2/434/Bu
Macromolecule	Carboxy-terminal processing protease (protein)

Explore in 3D

5FOE \| pdb_00005foe	Download File View File

Crystal structure of the C. elegans Protein O-fucosyltransferase 2 (CePOFUT2) double mutant (R298K-R299K) in complex with GDP and the human TSR1 from thrombospondin 1

Valero-Gonzalez, J., Leonhard-Melief, C., Lira-Navarrete, E., Jimenez-Oses, G., Hernandez-Ruiz, C., Pallares, M.C., Yruela, I., Vasudevan, D., Lostao, A., Corzana, F., Takeuchi, H., Haltiwanger, R.S., Hurtado-Guerrero, R.

(2016) Nat Chem Biol 12: 240

Released	2016-01-27
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Caenorhabditis elegans Homo sapiens
Macromolecule	GDP-fucose protein O-fucosyltransferase 2,Thrombospondin-1 (protein)
Unique Ligands	EDO, GDP, NAG

Explore in 3D

6IQQ \| pdb_00006iqq	Download File View File

Crystal structure of Prc with S452I and L252Y mutations in complex with NlpI

Chueh, C.K., Chang, C.I.

(2019) mBio 10:

Released	2019-07-24
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli K-12
Macromolecule	Lipoprotein NlpI (protein) Tail-specific protease (protein)
Unique Ligands	CA

Explore in 3D

6IQR \| pdb_00006iqr	Download File View File

Crystal structure of Prc with S452I and L252Y mutations

Chueh, C.K., Chang, C.I.

(2019) mBio 10:

Released	2019-07-24
Method	X-RAY DIFFRACTION 3.42 Å
Organisms	Escherichia coli K-12
Macromolecule	Tail-specific protease (protein)

Explore in 3D

6IQS \| pdb_00006iqs	Download File View File

Crystal structure of Prc with L245A and L340G mutations in complex with NlpI

Chuech, C.K., Chang, C.I.

(2019) mBio 10:

Released	2019-07-24
Method	X-RAY DIFFRACTION 2.69 Å
Organisms	Escherichia coli K-12
Macromolecule	Lipoprotein NlpI (protein) Tail-specific protease (protein)

Explore in 3D

6IQU \| pdb_00006iqu	Download File View File

Crystal structure of Prc with PDZ domain deletion in complex with NlpI

Chueh, C.K., Chang, C.I.

(2019) mBio 10:

Released	2019-07-24
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Escherichia coli K-12
Macromolecule	Lipoprotein NlpI (protein) Tail-specific protease (protein)

Explore in 3D

7YYK \| pdb_00007yyk	Download File View File

Crystal structure of the O-fucosylated form of TSRs1-3 from the human thrombospondin 1

Berardinelli, S.J., Eletsky, A., Valero-Gonzalez, J., Ito, A., Manjunath, R., Hurtado-Guerrero, R., Prestegard, J.R., Woods, R.J., Haltiwanger, R.S.

(2022) J Biological Chem 298: 102047-102047

Released	2022-05-25
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Thrombospondin-1 (protein)
Unique Ligands	EDO, FUC

Explore in 3D

8XUD \| pdb_00008xud	Download File View File

Crystal structure of adaptor NlpI in complex with endopeptidase MepS and PDZ-protease Prc

Tzeng, S.R., Wang, S., Huang, C.H.

(2024) Nat Commun 15: 5461-5461

Released	2024-06-05
Method	X-RAY DIFFRACTION 3.49 Å
Organisms	Escherichia coli K-12
Macromolecule	Lipoprotein NlpI (protein) Murein DD-endopeptidase MepS/Murein LD-carboxypeptidase (protein) Substrate peptide (protein) Tail-specific protease (protein)
Unique Ligands	PO4

1 to 15 of 15 Structures

Page 1 of 1

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1Z78 | pdb_00001z78

Crystal Structure of the Thrombospondin-1 N-terminal domain

1ZA4 | pdb_00001za4

Crystal Structure of the Thrombospondin-1 N-terminal Domain in Complex with Arixtra

2ERF | pdb_00002erf

Crystal Structure of the Thrombospondin-1 N-terminal Domain at 1.45A Resolution

2ES3 | pdb_00002es3

Crystal Structure of Thrombospondin-1 N-terminal Domain in P1 Form at 1.85A Resolution

2OUH | pdb_00002ouh

Crystal structure of the Thrombospondin-1 N-terminal domain in complex with fractionated Heparin DP10

2OUJ | pdb_00002ouj

The crystal structure of the Thrombospondin-1 N-terminal domain in complex with fractionated Heparin DP8

3R6B | pdb_00003r6b

Crystal Structure of Thrombospondin-1 TSR Domains 2 and 3

4QL6 | pdb_00004ql6

Structure of C. trachomatis CT441

5FOE | pdb_00005foe

Crystal structure of the C. elegans Protein O-fucosyltransferase 2 (CePOFUT2) double mutant (R298K-R299K) in complex with GDP and the human TSR1 from thrombospondin 1

6IQQ | pdb_00006iqq

Crystal structure of Prc with S452I and L252Y mutations in complex with NlpI

6IQR | pdb_00006iqr

Crystal structure of Prc with S452I and L252Y mutations

6IQS | pdb_00006iqs

Crystal structure of Prc with L245A and L340G mutations in complex with NlpI

6IQU | pdb_00006iqu

Crystal structure of Prc with PDZ domain deletion in complex with NlpI

7YYK | pdb_00007yyk

Crystal structure of the O-fucosylated form of TSRs1-3 from the human thrombospondin 1

8XUD | pdb_00008xud

Crystal structure of adaptor NlpI in complex with endopeptidase MepS and PDZ-protease Prc

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1Z78 | pdb_00001z78

1ZA4 | pdb_00001za4

2ERF | pdb_00002erf

2ES3 | pdb_00002es3

2OUH | pdb_00002ouh

2OUJ | pdb_00002ouj

3R6B | pdb_00003r6b

4QL6 | pdb_00004ql6

5FOE | pdb_00005foe

6IQQ | pdb_00006iqq

6IQR | pdb_00006iqr

6IQS | pdb_00006iqs

6IQU | pdb_00006iqu

7YYK | pdb_00007yyk

8XUD | pdb_00008xud