PDB Statistics: PDB Data Distribution by Expression System Organism

Expression organism for these structures is from a genetically manipulated source.

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Expression System Organism	Number of Entries
Escherichia coli	84916
Escherichia coli BL21(DE3)	44035
Escherichia coli BL21	8093
Spodoptera frugiperda	7000
Homo sapiens	6632
Trichoplusia ni	2267
Komagataella pastoris	1712
Escherichia coli 'BL21-Gold(DE3)pLysS AG	1690
Escherichia coli K-12	1271
Cricetulus griseus	1205
Saccharomyces cerevisiae	1179
Drosophila melanogaster	625
Mus musculus	435
unidentified baculovirus	331
Bacillus subtilis	240
synthetic construct	229
Escherichia coli DH5[alpha]	216
Komagataella phaffii GS115	182
Aspergillus oryzae	180
Escherichia coli B	154
Insect cell expression vector pTIE1	152
Saccharomyces cerevisiae S288C	145
Escherichia coli-Pichia pastoris shuttle vector pPpARG4	141
Baculovirus expression vector pFastBac1-HM	114
Escherichia coli M15	112
Gallus gallus	104
Mycolicibacterium smegmatis	104
Cereibacter sphaeroides	101
unidentified	95
Spodoptera aff. frugiperda 1 BOLD-2017	92
Halobacterium salinarum	73
Drosophila	64
Enterobacteria phage L1	64
Mycolicibacterium smegmatis MC2 155	64
Escherichia coli str. K-12 substr. W3110	60
Cricetinae	57
Mesocricetus auratus	56
Trichoderma reesei	54
Aspergillus niger	50
Escherichia coli MC1061	50
Pichia	49
Nicotiana benthamiana	44
Streptomyces lividans	44
Escherichia coli str. K-12 substr. DH10B	43
Komagataella phaffii CBS 7435	43
Spodoptera aff. frugiperda 2 RZ-2014	43
Bos taurus	42
Dictyostelium discoideum	42
Bacteria	41
Escherichia phage EcSzw-2	39
Lactococcus lactis	37
in vitro transcription vector pT7-TP(deltai)	37
Chlorocebus aethiops	36
Escherichia coli DH1	36
Escherichia coli #1/H766	34
Escherichia coli KRX	34
Mammalia	34
Oryctolagus cuniculus	32
Streptomyces lividans TK24	32
Cricetinae gen. sp.	31
Salmonella enterica subsp. enterica serovar Typhimurium	31
Spodoptera	29
Salmonella enterica	28
Pseudomonas aeruginosa	27
Leishmania tarentolae	26
Rhodococcus erythropolis	26
Thermus thermophilus	26
Thaumatococcus daniellii	25
Bacterial expression vector pBEN1-SGC	24
Pseudomonas fluorescens	24
Staphylococcus aureus	24
in vitro transcription vector pT7-Fluc(deltai)	24
Rattus norvegicus	22
Thermus thermophilus HB8	22
Haloferax volcanii	21
Escherichia coli HB101	20
Escherichia coli str. K-12 substr. MG1655	19
Escherichia coli-Thermus thermophilus shuttle vector pTRH1T	19
Pseudomonas putida	19
Trichoderma reesei QM6a	19
Desulfovibrio fructosivorans	18
Parengyodontium album	18
Priestia megaterium	18
Saccharomyces cerevisiae BY4741	18
Streptomyces rubiginosus	18
Aedes albopictus	17
Lactococcus lactis subsp. cremoris NZ9000	17
Azotobacter vinelandii	16
Escherichia coli O103:H2 str. 12009	16
Kluyveromyces lactis	16
Bacillus anthracis	15
Desulfovibrio vulgaris str. Hildenborough	15
Paracoccus denitrificans	14
Saccharomyces cerevisiae W303	14
Trichoplusia	14
Arabidopsis thaliana	13
Bacillus thermoproteolyticus	13
Paracoccus denitrificans PD1222	13
Rhodobacter capsulatus	13
Yarrowia lipolytica	13
Bacillus thuringiensis serovar israelensis	12
Shewanella frigidimarina	12
Shewanella oneidensis	12
Sus scrofa	12
Vibrio cholerae	12
Geobacillus stearothermophilus	11
Human gammaherpesvirus 4	11
Mammalian expression vector BsrGI-MCS-pcDNA3.1	11
Oryza sativa	11
Schizosaccharomyces pombe	11
Bacillus licheniformis	10
Bacillus thuringiensis	10
Cereibacter sphaeroides 2.4.1	10
Escherichia coli BW25113	10
Human immunodeficiency virus 1	10
Schizosaccharomyces	10
Shewanella oneidensis MR-1	10
Bacillus amyloliquefaciens	9
Baculoviridae sp.	9
Brevibacillus choshinensis	9
Chlorocebus sabaeus	9
Cupriavidus necator H16	9
Cyberlindnera jadinii	9
Desulfovibrio vulgaris	9
Sulfolobus islandicus REY15A	9
Daucus carota	8
Desulfovibrio fructosivorans JJ	8
Escherichia	8
Influenza A virus	8
Insect BA phytoplasma	8
Pichia kudriavzevii	8
Pseudomonas aeruginosa PAO1	8
Rhodobacter capsulatus SB 1003	8
Rhodococcus jostii RHA1	8
Trypanosoma brucei brucei	8
hybrid	8
mammal environmental sample	8
Bacteroides thetaiotaomicron	7
Brevibacillus	7
Escherichia coli 042	7
Escherichia coli O157:H7	7
Escherichia coli-Pichia pastoris shuttle vector pPpGUT1	7
Escherichia virus T4	7
Komagataella phaffii	7
Mammalian expression vector Flag-MCS-pcDNA3.1	7
Mycobacterium tuberculosis H37Rv	7
Penicillium canescens	7
Priestia megaterium NBRC 15308 = ATCC 14581	7
Thermoactinomyces vulgaris	7
Trichoderma reesei RUT C-30	7
Wolinella succinogenes	7
Aedes albopictus C6/36 cell densovirus	6
Agrobacterium tumefaciens	6
Aspergillus awamori	6
Aspergillus nidulans	6
Baculovirus transfer vector pFASTBAC1	6
Desulfovibrio desulfuricans	6
Enterococcus faecalis	6
Escherichia phage T7	6
Insecta environmental sample	6
Mammalian expression vector pBGSA	6
Mus musculoides	6
Pedobacter heparinus	6
Streptomyces coelicolor	6
Streptomyces sp.	6
Synechocystis sp. PCC 6803	6
Thermothelomyces thermophilus ATCC 42464	6
Xanthomonas oryzae pv. oryzae	6
unidentified plasmid	6
Antheraea	5
Aspergillus nidulans FGSC A4	5
Bacillus subtilis subsp. subtilis str. 168	5
Baculoviridae	5
Baculovirus expression vector pCTdual	5
Bombyx mori	5
Brevibacillus brevis	5
Canavalia ensiformis	5
Candida parapsilosis	5
Chlamydomonas reinhardtii	5
DNA satellites	5
Geobacter metallireducens GS-15	5
Mammalian expression vector pcDNA3.1-Flag	5
Nicotiana tabacum	5
Ogataea polymorpha RB11	5
Penicillium rubens Wisconsin 54-1255	5
Saccharomyces	5
Streptomyces albus	5
Toxoplasma gondii ME49	5
Trichoderma reesei QM9414	5
Vibrio natriegens	5
Aerococcus viridans	4
Aeromonas salmonicida	4
Aromatoleum evansii	4
Bacteria Latreille et al. 1825	4
Burkholderia cepacia	4
Canis lupus familiaris	4
Clostridium pasteurianum	4
Corynebacterium glutamicum ATCC 13032	4
Dictyostelium	4
Escherichia coli 536	4
Escherichia coli str. 'clone D i2	4
Escherichia phage Ecwhy_1	4
Expression vector pET-mod	4
Lactococcus cremoris	4
Lactococcus lactis subsp. lactis	4
Lama glama	4
Mammalian expression vector pCBio	4
Moorella thermoacetica	4
Mycolicibacterium vaccae	4
Serratia marcescens	4
Shewanella sp. ANA-3	4
Spodoptera frugiperda multiple nucleopolyhedrovirus	4
Staphylococcaceae	4
Streptomyces avidinii	4
Sulfolobus islandicus	4
Tetronarce californica	4
Vaccinia virus	4
Vaccinia virus Ankara	4
Vaccinia virus GLV-1h68	4
Vibrio sp.	4
Zymomonas mobilis	4
Apis mellifera	3
Atlantibacter hermannii	3
Azotobacter vinelandii DJ	3
Bacillus cereus	3
Bacterial expression vector pET-11a	3
Brassica rapa subsp. chinensis	3
Cell-free gateway cloning vector C-term 8xHis pCellFree_G02	3
Cell-free gateway cloning vector N-term 8xHis eGFP pCellFree_G03	3
Chaetomium thermophilum	3
Corynebacterium glutamicum	3
Cupriavidus necator	3
Cyanobacteria	3
Enterococcus hirae	3
Escherichia coli ATCC 8739	3
Escherichia coli str. 'clone D i14	3
Escherichia coli-Pichia pastoris shuttle vector pPpB1GAP_S	3
Escherichia coli-Pichia pastoris shuttle vector pPpB1_S	3
Escherichia coli-Pichia pastoris shuttle vector pPpHIS4	3
Felis catus	3
Halobacterium	3
Halobacterium salinarum R1	3
Hirudo medicinalis	3
Human herpesvirus 4 strain B95-8	3
Influenza B virus	3
Insect expression vector pBlueBacmsGCA1His	3
Insecta	3
Lactococcus lactis subsp. cremoris MG1363	3
Latilactobacillus sakei	3
Lentivirus	3
Mammalian 1 orthobornavirus	3
Mammalian expression vector Flag-EGFP-MCS-pcDNA3.1	3
Mammalian expression vector HA-MCS-pcDNA3.1	3
Mammalian expression vector pcDNA3-N-HA-LIC	3
Methylorubrum extorquens AM1	3
Ogataea angusta	3
Ogataea methanolica	3
Penicillium chrysogenum	3
Phacoides pectinatus	3
Phanerodontia chrysosporium	3
Phaseolus vulgaris	3
Physcomitrium patens	3
Pisum sativum	3
Porphyromonas gingivalis	3
Pseudomonas sp.	3
Pseudomonas stutzeri	3
Pseudomonas syringae	3
Pyrococcus furiosus COM1	3
Salmonella virus SP6	3
Shewanella	3
Shewanella frigidimarina NCIMB 400	3
Spodoptera frugiperda ascovirus 1a	3
Sulfolobus acidocaldarius DSM 639	3
Synthesium tursionis	3
Tetrahymena thermophila	3
Thermosynechococcus vestitus BP-1	3
Transcription vector pUC18-pES2	3
prokaryotic environmental samples	3
synthetic Escherichia coli C321.deltaA	3
Agrobacterium sp.	2
Alcaligenes hydrogenophilus	2
Alphabaculovirus	2
Aspergillus aculeatinus	2
Aspergillus sp.	2
Autographa californica nucleopolyhedrovirus	2
Blastochloris viridis	2
Caldicellulosiruptor bescii	2
Campylobacter jejuni	2
Caulobacter vibrioides CB15	2
Cell-free gateway cloning vector N-term 8xHis pCellFree_G01	2
Chlorobaculum tepidum	2
Cloning vector pGEM3_Zf	2
Cricetulus longicaudatus	2
Cricetulus migratorius	2
Ctenopharyngodon idella	2
Cypovirus	2
Drosophila acanthoptera	2
Enterococcus faecium	2
Equus caballus	2
Escherichia alba	2
Escherichia coli 1520	2
Escherichia coli C	2
Escherichia coli CFT073	2
Escherichia coli O103:H2	2
Escherichia coli O104:H4 str. 2009EL-2050	2
Escherichia coli str. K-12 substr. MC4100	2
Escherichia coli str. K-12 substr. MDS42	2
Escherichia coli-Pichia pastoris shuttle vector pPpB1GAP	2
Escherichia coli-Pichia pastoris shuttle vector pPpT4	2
Escherichia phage HY01	2
Gallus	2
Gluconobacter sp.	2
Helicobacter pylori 26695	2
Heliothis	2
Herpesviridae sp.	2
Histoplasma ohiense (nom. inval.)	2
Klebsiella aerogenes	2
Lactiplantibacillus plantarum	2
Legionella pneumophila	2
Listeria seeligeri	2
Macaca mulatta polyomavirus 1	2
Mammalia sp. MMA-2019	2
Mammalian expression vector EGFP-MCS-pcDNA3.1	2
Marinomonas mediterranea MMB-1	2
Methylococcus capsulatus	2
Microlophus theresioides	2
Milvago chimango chimango	2
Mus	2
Mycolicibacterium smegmatis MC2 51	2
Nacobbus aberrans	2
Nicotiana	2
Novosphingobium subterraneum	2
Oleidesulfovibrio alaskensis G20	2
Paenibacillus sp. SVP_R3	2
Paracoccus pantotrophus	2
Peptide display vector fth1	2
Porphyromonas gingivalis W83	2
Pseudomonas alcaligenes	2
Pseudomonas putida KT2440	2
Pseudomonas savastanoi pv. phaseolicola	2
Pyrococcus furiosus	2
Rhodobacter sp.	2
Rhodopseudomonas palustris	2
Salmonella enterica subsp. enterica serovar Typhimurium str. LT2	2
Schizosaccharomyces pombe 972h-	2
Schizosaccharomyces pombe expression vector pARG1B	2
Severe acute respiratory syndrome coronavirus 2	2
Shigella flexneri	2
Staphylococcus aureus subsp. aureus NCTC 8325	2
Streptomyces coelicolor A3(2)	2
Sus scrofa domesticus	2
Talaromyces cellulolyticus	2
Thermococcus kodakarensis	2
Thermosynechococcus vestitus	2
Tomato mosaic virus	2
Trichoplusia ni ascovirus 2a	2
Triticum aestivum	2
Tritirachium	2
Vibrio	2
Vigna unguiculata	2
Achromobacter sp.	1
Acidiphilium rubrum	1
Acinetobacter baumannii	1
Aeromonas schubertii	1
Aeromonas sobria	1
African cassava mosaic virus	1
Alkalihalobacillus halodurans	1
Alkalihalobacillus halodurans C-125	1
Alkalihalobacillus pseudofirmus OF4	1
Aphyosemion etsamense	1
Arabidopsis	1
Aspergillus flavus	1
Aspergillus luchuensis	1
Aspergillus niger CBS 513.88	1
Aspergillus oryzae RIB40	1
Aspergillus pseudosclerotiorum	1
Aspergillus terreus	1
Autographa	1
Azospira oryzae PS	1
BAC cloning vector attB-P[acman]-ApR-F-2-5-attB	1
Bacillus anthracis str. Ames	1
Bacillus sp. H-257	1
Bacillus thuringiensis BMB171	1
Bacillus virus phi29	1
Bacterial expression vector pAIL2	1
Bacterial selection and production vector pMES4	1
Bacteroides thetaiotaomicron VPI-5482	1
Baculovirus expression vector pUltraBac-1	1
Beijerinckia	1
Bluetongue virus 1	1
Bordetella pertussis	1
Borreliella burgdorferi	1
Branchiostoma lanceolatum	1
Camelus dromedarius	1
Candida albicans SC5314	1
Canine parvovirus	1
Carica papaya	1
Caulobacter segnis	1
Chaetomium thermophilum var. thermophilum DSM 1495	1
Cloning vector AbVec-hIgG1	1
Cloning vector AbVec-hIgKappa	1
Cloning vector pNF2214	1
Cloning vector pUC19	1
Clostridioides difficile R20291	1
Cocos nucifera	1
Comamonas sp. Hi5	1
Corynebacterium ammoniagenes	1
Corynespora cassiicola	1
Cricetus	1
Cydia pomonella granulosis virus (isolate Mexican)	1
Debaryomyces castellii	1
Dendroaspis jamesoni jamesoni	1
Dengue virus 4 Philippines/H241/1956	1
Desulfocurvibacter africanus	1
Dictyostelium discoideum AX4	1
Diutina rugosa	1
Drosophila albipalpis	1
Drosophila falleni	1
Drosophila hydei	1
Drosophila nebulosa	1
Drosophila sp. (in: Insecta)	1
Ectothiorhodospira haloalkaliphila	1
Enterobacteria phage fd	1
Eosentomon sp. 1 EDA-2008	1
Erinaceus europaeus	1
Escharinidae	1
Eschenbachia	1
Escherichia coli 5-172-05_S1_C3	1
Escherichia coli 55989	1
Escherichia coli B41	1
Escherichia coli B83	1
Escherichia coli KO11FL	1
Escherichia coli O127:H6	1
Escherichia coli O17 str. K12a	1
Escherichia coli str. K-12 substr. MG1655star	1
Escherichia coli-Pichia pastoris shuttle vector pPpB1_Alpha_S	1
Escherichia coli-Pichia pastoris shuttle vector pPpKan_Alpha_S	1
Escherichia coli-Thermus thermophilus shuttle vector pTRK1T	1
Eukaryota sp.	1
Expression vector pET21a-LIC	1
Gadus morhua	1
Galleria mellonella	1
Gemmatimonas phototrophica	1
Geobacillus thermodenitrificans	1
Geobacter sulfurreducens	1
Gloeobacter	1
Gloeobacter violaceus PCC 7421	1
Glycine max	1
HIV whole-genome vector AA1305#18	1
Halobacterium salinarum NRC-1	1
Halobacterium sp.	1
Halorubrum pleomorphic virus 2	1
Halorubrum pleomorphic virus 6	1
Homo	1
Homo sapiens neanderthalensis	1
Hordeum vulgare	1
Human adenovirus E4	1
Ignicoccus hospitalis	1
Influenza A virus (A/duck/Fujian/13/2002(H5N1))	1
Insect expression vector pBlueBacmsGCB1His	1
Jasminum sambac	1
Kitasatospora aureofaciens	1
Kluyveromyces marxianus	1
Komagataella pastoris DSMZ 70382	1
Kurthia sp. 11kri321	1
Leishmania donovani	1
Leptographium truncatum	1
Leptoxyphium fumago	1
Listeria monocytogenes EGD-e	1
Mammalian expression vector pCI-NEO-FLAG-SMNdelta3,4,5,6,7	1
Mammalian expression vector pCK146	1
Mammalian expression vector pCK9	1
Mammalian expression vector pCMV-Script	1
Methanocaldococcus villosus	1
Methanothermobacter thermautotrophicus	1
Methanothermococcus thermolithotrophicus	1
Methylococcus capsulatus str. Bath	1
Methylophaga aminisulfidivorans	1
Methylophaga aminisulfidivorans MP	1
Methylorubrum extorquens PA1	1
Micromonospora sp. 47TW	1
Moesziomyces antarcticus	1
Moringa oleifera	1
Murine norovirus 1	1
Mus abbotti	1
Mycoplasma genitalium G37	1
Naja oxiana	1
Natronomonas pharaonis	1
Neisseria gonorrhoeae	1
Neurospora crassa	1
Niallia circulans	1
Nicotiana glutinosa	1
Nitzschia sp. VD-2008	1
Nocardioides pyridinolyticus JCM 10369	1
Nostoc phage A1	1
Nostoc sp. PCC 7120 = FACHB-418	1
Origami vector p7308	1
Ovis aries	1
Paenibacillus sp. SVP_S 25	1
Paenibacillus sp. SVP_S35	1
Paenibacillus sp. UR_S19	1
Panicum miliaceum	1
Pectobacterium atrosepticum	1
Penicillium oxalicum	1
Pheidole spadonia	1
Pichia aff. alni PL5W1	1
Pichia kluyveri	1
Polyangium	1
Porcine circovirus 2	1
Porphyromonas gingivalis ATCC 33277	1
Prochlorococcus marinus	1
Prochlorococcus marinus subsp. pastoris	1
Prochlorococcus sp.	1
Prosthecochloris aestuarii	1
Pseudoalteromonas sp. AB293f	1
Pseudomonas aeruginosa PAK	1
Pyrococcus horikoshii	1
RNA transcription vector pBRDI1	1
Rhodococcus jostii	1
Rhodococcus sp. MB1	1
Saccharomyces cerevisiae AWRI1631	1
Saccharomyces pastorianus CBS 1513	1
Saccharomycetales	1
Scheffersomyces stipitis	1
Schistosoma mansoni	1
Scombridae gen. sp.	1
Serratia	1
Serratia sp. ATCC 39006	1
Shewanella algae	1
Shigella flexneri 5a str. M90T	1
Simulium sp. iridescent virus	1
Sinorhizobium meliloti	1
Sinorhizobium meliloti 1021	1
Sphingomonas sp. KT-1	1
Spinacia oleracea	1
Spiroplasma melliferum	1
Spodoptera frugiperda ascovirus 1c	1
Spodoptera littoralis	1
Staphylococcus virus Twort	1
Streptococcus pyogenes	1
Streptomyces antibioticus JCM 4620	1
Streptomyces avermitilis	1
Streptomyces mobaraensis NBRC 13819 = DSM 40847	1
Streptomyces parvulus	1
Streptomyces sp. Eai2	1
Streptomyces toyocaensis	1
Streptomyces verticillus	1
Styela clava	1
Sulfurisphaera tokodaii str. 7	1
Sus barbatus	1
Synechococcus sp.	1
Synechococcus sp. PCC 7002	1
Synthemis	1
Synthesiomyia	1
Talaromyces funiculosus	1
Talaromyces verruculosus	1
Tatumella citrea	1
Teratobaicalia	1
Thermoplasma acidophilum	1
Thermus	1
Thermus thermophilus HB27	1
Thioalkalivibrio paradoxus	1
Thiobacillus denitrificans ATCC 25259	1
Thysanoplusia daubei	1
Tribolium castaneum	1
Trichoderma longibrachiatum	1
Trichoplasta	1
Trichoplusia lectula	1
Trichoplusia ni cypovirus 15	1
Trichoptera	1
Trioceros cristatus	1
Trypanosoma brucei	1
Trypanosoma cruzi	1
Vesicular stomatitis virus	1
Vibrio atlanticus LGP32	1
Vibrio cholerae 2740-80	1
Vibrio parahaemolyticus	1
Vibrio vulnificus	1
Xanthomonas hortorum pv. gardneri	1
Xenopus laevis	1
Yarrowia lipolytica CLIB122	1
Zea mays	1
Zika virus ZIKV/H. sapiens/FrenchPolynesia/10087PF/2013	1
bacterial endosymbiont of Idas sp.	1
bacterium	1
bacterium 2b-G12	1
bacterium T452	1
chemical production metagenome	1
invertebrate environmental sample	1
metagenome	1
pBR322 based IG-lambda expression vector	1
unidentified adenovirus	1

RCSB PDB is funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.

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191869 Biological Macromolecular Structures Enabling Breakthroughs in Research and Education

PDB Statistics: PDB Data Distribution by Expression System Organism