24MC | pdb_000024mc

Structure of oocyte cytoplasmic lattices

PDB DOI: https://doi.org/10.2210/pdb24MC/pdb
EM Map EMD-69647: EMDB EMDataResource

Classification: CELL CYCLE
Organism(s): Mus musculus
Mutation(s): No

Deposited: 2026-03-10 Released: 2026-05-06
Deposition Author(s): Liu, Q., Gui, M.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.40 Å
Aggregation State: FILAMENT
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

The structure of oocytes cytoplasmic lattice

Liu, Q., Gui, M.

To be published.

Macromolecule Content

Total Structure Weight: 2,339.07 kDa
Atom Count: 138,959
Modeled Residue Count: 17,414
Deposited Residue Count: 20,608
Unique protein chains: 16

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
F-box and WD-40 domain protein 19	A [auth m]	466	Mus musculus	Mutation(s): 0
UniProt
Find proteins for Q8C2W8 (Mus musculus) Explore Q8C2W8 Go to UniProtKB: Q8C2W8
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q8C2W8
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Reference Sequence

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Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
F-box and WD-40 domain protein 21	B [auth p]	468	Mus musculus	Mutation(s): 0
UniProt
Find proteins for Q8BI38 (Mus musculus) Explore Q8BI38 Go to UniProtKB: Q8BI38
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q8BI38
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Reference Sequence

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Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Inactive protein-arginine deiminase type-6	C [auth A] D [auth B] E [auth C] F [auth D] G [auth E] C [auth A], D [auth B], E [auth C], F [auth D], G [auth E], H [auth F], I [auth G], J [auth H], K [auth I], L [auth K]	682	Mus musculus	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q8K3V4 (Mus musculus) Explore Q8K3V4 Go to UniProtKB: Q8K3V4
IMPC: MGI:2655198
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q8K3V4
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Reference Sequence

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Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
NLR family, pyrin domain containing 4F	M, R	937	Mus musculus	Mutation(s): 0
UniProt
Find proteins for L7N1W9 (Mus musculus) Explore L7N1W9 Go to UniProtKB: L7N1W9
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	L7N1W9
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Reference Sequence

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Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details	Image
Oocyte-expressed protein homolog	N, U	164	Mus musculus	Mutation(s): 0
UniProt
Find proteins for Q9CWE6 (Mus musculus) Explore Q9CWE6 Go to UniProtKB: Q9CWE6
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9CWE6
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Reference Sequence

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Entity ID: 6
Molecule	Chains	Sequence Length	Organism	Details	Image
Isoform 2 of KH domain-containing protein 3	O	346	Mus musculus	Mutation(s): 0
UniProt
Find proteins for Q9CWU5 (Mus musculus) Go to UniProtKB: Q9CWU5
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9CWU5-2
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Reference Sequence

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Entity ID: 7
Molecule	Chains	Sequence Length	Organism	Details	Image
NACHT, LRR and PYD domains-containing protein 5	P, S	1,163	Mus musculus	Mutation(s): 0
UniProt
Find proteins for Q9R1M5 (Mus musculus) Explore Q9R1M5 Go to UniProtKB: Q9R1M5
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9R1M5
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Reference Sequence

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Entity ID: 8
Molecule	Chains	Sequence Length	Organism	Details	Image
Transducin-like enhancer protein 6	Q, T	581	Mus musculus	Mutation(s): 0
UniProt
Find proteins for Q9WVB3 (Mus musculus) Explore Q9WVB3 Go to UniProtKB: Q9WVB3
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9WVB3
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Reference Sequence

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Entity ID: 9
Molecule	Chains	Sequence Length	Organism	Details	Image
Zinc finger BED domain-containing protein 3	V	228	Mus musculus	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q9D0L1 (Mus musculus) Explore Q9D0L1 Go to UniProtKB: Q9D0L1
IMPC: MGI:1919364
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9D0L1
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Reference Sequence

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Entity ID: 10
Molecule	Chains	Sequence Length	Organism	Details	Image
Tubulin beta-2A chain	W, Z	445	Mus musculus	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q7TMM9 (Mus musculus) Explore Q7TMM9 Go to UniProtKB: Q7TMM9
IMPC: MGI:107861
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q7TMM9
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Reference Sequence

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Entity ID: 11
Molecule	Chains	Sequence Length	Organism	Details	Image
Tubulin alpha-1C chain	X, Y	449	Mus musculus	Mutation(s): 0 EC: 3.6.5
UniProt & NIH Common Fund Data Resources
Find proteins for P68373 (Mus musculus) Explore P68373 Go to UniProtKB: P68373
IMPC: MGI:1095409
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P68373
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Reference Sequence

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Entity ID: 12
Molecule	Chains	Sequence Length	Organism	Details	Image
Ubiquitin-conjugating enzyme E2 D3	AA [auth a], CA [auth c]	147	Mus musculus	Mutation(s): 0 EC: 2.3.2.23 (PDB Primary Data), 2.3.2.24 (PDB Primary Data)
UniProt & NIH Common Fund Data Resources
Find proteins for P61079 (Mus musculus) Explore P61079 Go to UniProtKB: P61079
IMPC: MGI:1913355
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P61079
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Reference Sequence

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Entity ID: 13
Molecule	Chains	Sequence Length	Organism	Details	Image
E3 ubiquitin-protein ligase UHRF1	BA [auth b], DA [auth d]	782	Mus musculus	Mutation(s): 0 EC: 2.3.2.27
UniProt & NIH Common Fund Data Resources
Find proteins for Q8VDF2 (Mus musculus) Explore Q8VDF2 Go to UniProtKB: Q8VDF2
IMPC: MGI:1338889
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q8VDF2
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Reference Sequence

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Entity ID: 14
Molecule	Chains	Sequence Length	Organism	Details	Image
NACHT, LRR and PYD domains-containing protein 14	EA [auth e], FA [auth f]	993	Mus musculus	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q6B966 (Mus musculus) Explore Q6B966 Go to UniProtKB: Q6B966
IMPC: MGI:1924108
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q6B966
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Reference Sequence

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Entity ID: 15
Molecule	Chains	Sequence Length	Organism	Details	Image
S-phase kinase-associated protein 1	GA [auth h], IA [auth j], JA [auth l]	163	Mus musculus	Mutation(s): 0
UniProt
Find proteins for Q9WTX5 (Mus musculus) Explore Q9WTX5 Go to UniProtKB: Q9WTX5
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9WTX5
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Reference Sequence

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Entity ID: 16
Molecule	Chains	Sequence Length	Organism	Details	Image
Expressed sequence C85627	HA [auth n]	469	Mus musculus	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q3TSA9 (Mus musculus) Explore Q3TSA9 Go to UniProtKB: Q3TSA9
IMPC: MGI:3505704
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q3TSA9
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Reference Sequence

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
GTP (Subject of Investigation/LOI) Query on GTP Download:Ideal Coordinates CCD File SDF format, chain PA [auth X] SDF format, chain RA [auth Y] SDF format, chain TA [auth Z] SDF format, chain NA [auth W] MOL2 format, chain PA [auth X] MOL2 format, chain RA [auth Y] MOL2 format, chain TA [auth Z] MOL2 format, chain NA [auth W] mmCIF format, chain PA [auth X] mmCIF format, chain RA [auth Y] mmCIF format, chain TA [auth Z] mmCIF format, chain NA [auth W]	NA [auth W], PA [auth X], RA [auth Y], TA [auth Z]	GUANOSINE-5'-TRIPHOSPHATE C₁₀ H₁₆ N₅ O₁₄ P₃ XKMLYUALXHKNFT-UUOKFMHZSA-N		Interactions Focus chain NA [auth W] Focus chain PA [auth X] Focus chain RA [auth Y] Focus chain TA [auth Z] Interactions & Density Focus chain NA [auth W] Focus chain PA [auth X] Focus chain RA [auth Y] Focus chain TA [auth Z]
ATP (Subject of Investigation/LOI) Query on ATP Download:Ideal Coordinates CCD File SDF format, chain BB [auth e] SDF format, chain CB [auth f] SDF format, chain KA [auth P] SDF format, chain LA [auth R] SDF format, chain MA [auth S] MOL2 format, chain BB [auth e] MOL2 format, chain CB [auth f] MOL2 format, chain KA [auth P] MOL2 format, chain LA [auth R] MOL2 format, chain MA [auth S] mmCIF format, chain BB [auth e] mmCIF format, chain CB [auth f] mmCIF format, chain KA [auth P] mmCIF format, chain LA [auth R] mmCIF format, chain MA [auth S]	BB [auth e], CB [auth f], KA [auth P], LA [auth R], MA [auth S]	ADENOSINE-5'-TRIPHOSPHATE C₁₀ H₁₆ N₅ O₁₃ P₃ ZKHQWZAMYRWXGA-KQYNXXCUSA-N		Interactions Focus chain BB [auth e] Focus chain CB [auth f] Focus chain KA [auth P] Focus chain LA [auth R] Focus chain MA [auth S] Interactions & Density Focus chain BB [auth e] Focus chain CB [auth f] Focus chain KA [auth P] Focus chain LA [auth R] Focus chain MA [auth S]
ZN (Subject of Investigation/LOI) Query on ZN Download:Ideal Coordinates CCD File SDF format, chain AB [auth d] SDF format, chain VA [auth b] SDF format, chain XA [auth b] SDF format, chain YA [auth d] SDF format, chain ZA [auth d] SDF format, chain WA [auth b] MOL2 format, chain AB [auth d] MOL2 format, chain VA [auth b] MOL2 format, chain XA [auth b] MOL2 format, chain YA [auth d] MOL2 format, chain ZA [auth d] MOL2 format, chain WA [auth b] mmCIF format, chain AB [auth d] mmCIF format, chain VA [auth b] mmCIF format, chain XA [auth b] mmCIF format, chain YA [auth d] mmCIF format, chain ZA [auth d] mmCIF format, chain WA [auth b]	AB [auth d] VA [auth b] WA [auth b] XA [auth b] YA [auth d] AB [auth d], VA [auth b], WA [auth b], XA [auth b], YA [auth d], ZA [auth d]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Interactions Focus chain AB [auth d] Focus chain VA [auth b] Focus chain WA [auth b] Focus chain XA [auth b] Focus chain YA [auth d] Focus chain ZA [auth d] Interactions & Density Focus chain AB [auth d] Focus chain VA [auth b] Focus chain WA [auth b] Focus chain XA [auth b] Focus chain YA [auth d] Focus chain ZA [auth d]
MG (Subject of Investigation/LOI) Query on MG Download:Ideal Coordinates CCD File SDF format, chain OA [auth W] SDF format, chain SA [auth Y] SDF format, chain UA [auth Z] SDF format, chain QA [auth X] MOL2 format, chain OA [auth W] MOL2 format, chain SA [auth Y] MOL2 format, chain UA [auth Z] MOL2 format, chain QA [auth X] mmCIF format, chain OA [auth W] mmCIF format, chain SA [auth Y] mmCIF format, chain UA [auth Z] mmCIF format, chain QA [auth X]	OA [auth W], QA [auth X], SA [auth Y], UA [auth Z]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain OA [auth W] Focus chain QA [auth X] Focus chain SA [auth Y] Focus chain UA [auth Z] Interactions & Density Focus chain OA [auth W] Focus chain QA [auth X] Focus chain SA [auth Y] Focus chain UA [auth Z]