2CY9 | pdb_00002cy9

Crystal structure of thioesterase superfamily member2 from Mus musculus

• PDB DOI: https://doi.org/10.2210/pdb2CY9/pdb

• Classification: HYDROLASE
• Organism(s): Mus musculus
• Mutation(s): Yes 


• Deposited: 2005-07-06 Released: 2006-01-06 
• Deposition Author(s): Hosaka, T., Murayama, K., Kishishita, S., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.72 Å
• R-Value Free: 
  0.262 (Depositor), 0.215 (DCC) 
• R-Value Work: 
  0.191 (Depositor), 0.214 (DCC) 
• R-Value Observed: 
  0.194 (Depositor) 

Literature

Crystal structure of thioesterase superfamily member2 from Mus musculus

Hosaka, T., Murayama, K., Kishishita, S., Shirouzu, M., Yokoyama, S.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 31.25 kDa 
• Atom Count: 1,959 
• Modeled Residue Count: 255 
• Deposited Residue Count: 280 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Thioesterase superfamily member 2	A, B	140	Mus musculus	Mutation(s): 9  EC: 3.1.2 (PDB Primary Data), 3.1.2.2 (UniProt)
UniProt
Find proteins for Q9CQR4 (Mus musculus) Explore Q9CQR4  Go to UniProtKB:  Q9CQR4

Small Molecules

Modified Residues  1 Unique
ID	Chains	Modified Residue	Modification Type	Formula	2D Diagram
MSE	A, B	MET	Selenomethionine	C5 H11 N O2 Se

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.72 Å
• R-Value Free:  0.262 (Depositor), 0.215 (DCC) 
• R-Value Work:  0.191 (Depositor), 0.214 (DCC) 
• R-Value Observed: 0.194 (Depositor) 

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 66.522	α = 90
b = 90.195	β = 118.32
c = 61.21	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data reduction
SCALEPACK	data scaling
SOLVE	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2006-01-06 
Deposition Author(s): Hosaka, T., Murayama, K., Kishishita, S., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History  

• Version 1.0: 2006-01-06
  Type: Initial release
  
• Version 1.1: 2008-04-30
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2024-11-20
  Changes: Data collection, Database references, Derived calculations, Structure summary