2N6N

Structure Determination for spider toxin, U4-agatoxin-Ao1a


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 200 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy and best stereochemical properties 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Structural venomics reveals evolution of a complex venom by duplication and diversification of an ancient peptide-encoding gene.

Pineda, S.S.Chin, Y.K.Undheim, E.A.B.Senff, S.Mobli, M.Dauly, C.Escoubas, P.Nicholson, G.M.Kaas, Q.Guo, S.Herzig, V.Mattick, J.S.King, G.F.

(2020) Proc Natl Acad Sci U S A 117: 11399-11408

  • DOI: https://doi.org/10.1073/pnas.1914536117
  • Primary Citation of Related Structures:  
    2N6N, 2N6R, 2N8K, 6BA3

  • PubMed Abstract: 

    Spiders are one of the most successful venomous animals, with more than 48,000 described species. Most spider venoms are dominated by cysteine-rich peptides with a diverse range of pharmacological activities. Some spider venoms contain thousands of unique peptides, but little is known about the mechanisms used to generate such complex chemical arsenals. We used an integrated transcriptomic, proteomic, and structural biology approach to demonstrate that the lethal Australian funnel-web spider produces 33 superfamilies of venom peptides and proteins. Twenty-six of the 33 superfamilies are disulfide-rich peptides, and we show that 15 of these are knottins that contribute >90% of the venom proteome. NMR analyses revealed that most of these disulfide-rich peptides are structurally related and range in complexity from simple to highly elaborated knottin domains, as well as double-knot toxins, that likely evolved from a single ancestral toxin gene.


  • Organizational Affiliation

    Institute for Molecular Bioscience, The University of Queensland, St Lucia, QLD 4072, Australia; sandy.spineda@gmail.com glenn.king@imb.uq.edu.au.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
U4-agatoxin-Ao1a32Agelena orientalisMutation(s): 0 
UniProt
Find proteins for Q5Y4U5 (Agelena orientalis)
Explore Q5Y4U5 
Go to UniProtKB:  Q5Y4U5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ5Y4U5
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 200 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy and best stereochemical properties 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2016-08-31
    Type: Initial release
  • Version 1.1: 2023-03-08
    Changes: Data collection, Database references
  • Version 1.2: 2024-10-30
    Changes: Data collection, Database references, Structure summary