Download MendeleyCrystal structure of hypothetical protein (NP_242193.1) from Bacillus halodurans at 1.90 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
2O08
CRYSTAL STRUCTURE OF A PUTATIVE HD SUPERFAMILY HYDROLASE (BH1327) FROM BACILLUS HALODURANS AT 1.90 A RESOLUTION
- PDB DOI: https://doi.org/10.2210/pdb2O08/pdb
- Classification: HYDROLASE
- Organism(s): Halalkalibacterium halodurans
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2006-11-27 Released: 2006-12-19
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.223
- R-Value Work: 0.174
- R-Value Observed: 0.176
This is version 1.6 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| BH1327 protein | 188 | Halalkalibacterium halodurans | Mutation(s): 4 Gene Names: NP_242193.1 EC: 3.6.1.41 |  | |
UniProt | |||||
Find proteins for Q9KD90 (Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)) Explore Q9KD90 Go to UniProtKB: Q9KD90 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9KD90 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 6 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| DGI Query on DGI | O [auth B] | 2'-DEOXYGUANOSINE-5'-DIPHOSPHATE C10 H15 N5 O10 P2 CIKGWCTVFSRMJU-KVQBGUIXSA-N |  | ||
| PG4 Query on PG4 | G [auth A] H [auth A] I [auth A] J [auth A] K [auth A] | TETRAETHYLENE GLYCOL C8 H18 O5 UWHCKJMYHZGTIT-UHFFFAOYSA-N |  | ||
| PO4 Query on PO4 | E [auth A] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |  | ||
| NO3 Query on NO3 | N [auth B] | NITRATE ION N O3 NHNBFGGVMKEFGY-UHFFFAOYSA-N |  | ||
| FE Query on FE | C [auth A], D [auth A], L [auth B], M [auth B] | FE (III) ION Fe VTLYFUHAOXGGBS-UHFFFAOYSA-N |  | ||
| UNL Query on UNL | F [auth A] | Unknown ligand VTLYFUHAOXGGBS-UHFFFAOYSA-N | |||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.223
- R-Value Work: 0.174
- R-Value Observed: 0.176
- Space Group: C 2 2 21
- Diffraction Data: https://doi.org/10.18430/M32O08
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 86.83 | α = 90 |
| b = 166.51 | β = 90 |
| c = 73.41 | γ = 90 |
| Software Name | Purpose |
|---|---|
| MolProbity | model building |
| SHARP | phasing |
| REFMAC | refinement |
| XSCALE | data scaling |
| PDB_EXTRACT | data extraction |
| XDS | data reduction |
| SHELX | phasing |
Entry History
Deposition Data
- Released Date: 2006-12-19 Deposition Author(s): Joint Center for Structural Genomics (JCSG)
Revision History (Full details and data files)
- Version 1.0: 2006-12-19
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Advisory, Version format compliance - Version 1.3: 2017-10-18
Changes: Refinement description - Version 1.4: 2017-10-25
Changes: Author supporting evidence - Version 1.5: 2023-01-25
Changes: Database references, Derived calculations - Version 1.6: 2024-10-09
Changes: Data collection, Refinement description, Structure summary
