2YUU

Solution structure of the first Phorbol esters/diacylglycerol binding domain of human Protein kinase C, delta

• PDB DOI: https://doi.org/10.2210/pdb2YUU/pdb
• BMRB: 11151

• Classification: TRANSFERASE
• Organism(s): Homo sapiens
• Mutation(s): No 
• Membrane Protein: Yes  OPM


• Deposited: 2007-04-06 Released: 2008-04-08 
• Deposition Author(s): Abe, H., Miyamoto, K., Tochio, N., Saito, K., Sasagawa, A., Koshiba, S., Inoue, M., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: structures with the least restraint violations,target function 

Literature

Solution structure of the first Phorbol esters/diacylglycerol binding domain of human Protein kinase C, delta

Abe, H., Miyamoto, K., Tochio, N., Saito, K., Sasagawa, A., Koshiba, S., Inoue, M., Kigawa, T., Yokoyama, S.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 9.09 kDa 
• Atom Count: 627 
• Modelled Residue Count: 83 
• Deposited Residue Count: 83 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Protein kinase C delta type	A	83	Homo sapiens	Mutation(s): 0  Gene Names: PRKCD EC: 2.7.11.13 (PDB Primary Data), 2.7.10.2 (UniProt) Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for Q05655 (Homo sapiens) Explore Q05655  Go to UniProtKB:  Q05655
PHAROS:  Q05655 GTEx:  ENSG00000163932

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
ZN	B [auth A], C [auth A]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: structures with the least restraint violations,target function 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2008-04-08 
Deposition Author(s): Abe, H., Miyamoto, K., Tochio, N., Saito, K., Sasagawa, A., Koshiba, S., Inoue, M., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History  

• Version 1.0: 2008-04-08
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2022-03-16
  Changes: Data collection, Database references, Derived calculations
• Version 1.3: 2024-05-29
  Changes: Data collection