3EZZ | pdb_00003ezz

Crystal Structure of human MKP-2

PDB DOI: https://doi.org/10.2210/pdb3EZZ/pdb

Classification: HYDROLASE
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2008-10-24 Released: 2009-08-25
Deposition Author(s): Jeong, D.G., Jung, S.K., Ryu, S.E., Kim, S.J.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.90 Å
R-Value Free:
0.242 (Depositor), 0.236 (DCC)
R-Value Work:
0.219 (Depositor)
R-Value Observed:
0.221 (Depositor)

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Crystal structure of the catalytic domain of human MKP-2 reveals a 24-mer assembly.

Jeong, D.G., Jung, S.K., Yoon, T.S., Woo, E.J., Kim, J.H., Park, B.C., Ryu, S.E., Kim, S.J.

(2009) Proteins 76: 763-767

PubMed: 19415758 Search on PubMed
DOI: https://doi.org/10.1002/prot.22423
Primary Citation Related Structures:
3EZZ

Organizational Affiliation

Medical Proteomics Research Center, Korea Research Institute of Bioscience and Biotechnology, Yuseong-Gu, Daejeon, Republic of Korea.

Macromolecule Content

Total Structure Weight: 98.99 kDa
Atom Count: 6,921
Modeled Residue Count: 864
Deposited Residue Count: 864
Unique protein chains: 1

Macromolecules

Find similar proteins by:

| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Dual specificity protein phosphatase 4	A, B, C, D, E A, B, C, D, E, F	144	Homo sapiens	Mutation(s): 1 Gene Names: DUSP4, MKP2, VH2 EC: 3.1.3.48 (PDB Primary Data), 3.1.3.16 (PDB Primary Data)
UniProt & NIH Common Fund Data Resources
Find proteins for Q13115 (Homo sapiens) Explore Q13115 Go to UniProtKB: Q13115
PHAROS: Q13115 GTEx: ENSG00000120875
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q13115
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
SO4 Query on SO4 Download:Ideal Coordinates CCD File SDF format, chain G [auth A] SDF format, chain H [auth A] SDF format, chain I [auth B] SDF format, chain J [auth C] SDF format, chain K [auth C] SDF format, chain L [auth D] SDF format, chain M [auth D] SDF format, chain N [auth E] SDF format, chain O [auth F] MOL2 format, chain G [auth A] MOL2 format, chain H [auth A] MOL2 format, chain I [auth B] MOL2 format, chain J [auth C] MOL2 format, chain K [auth C] MOL2 format, chain L [auth D] MOL2 format, chain M [auth D] MOL2 format, chain N [auth E] MOL2 format, chain O [auth F] mmCIF format, chain G [auth A] mmCIF format, chain H [auth A] mmCIF format, chain I [auth B] mmCIF format, chain J [auth C] mmCIF format, chain K [auth C] mmCIF format, chain L [auth D] mmCIF format, chain M [auth D] mmCIF format, chain N [auth E] mmCIF format, chain O [auth F]	G [auth A] H [auth A] I [auth B] J [auth C] K [auth C] G [auth A], H [auth A], I [auth B], J [auth C], K [auth C], L [auth D], M [auth D], N [auth E], O [auth F]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain G [auth A] Focus chain H [auth A] Focus chain I [auth B] Focus chain J [auth C] Focus chain K [auth C] Focus chain L [auth D] Focus chain M [auth D] Focus chain N [auth E] Focus chain O [auth F] Interactions & Density Focus chain G [auth A] Focus chain H [auth A] Focus chain I [auth B] Focus chain J [auth C] Focus chain K [auth C] Focus chain L [auth D] Focus chain M [auth D] Focus chain N [auth E] Focus chain O [auth F]