3GPD | pdb_00003gpd

TWINNING IN CRYSTALS OF HUMAN SKELETAL MUSCLE D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE

PDB DOI: https://doi.org/10.2210/pdb3GPD/pdb

Classification: OXIDOREDUCTASE (NAD(A)-ALDEHYDE(D))
Organism(s): Homo sapiens
Mutation(s): No

Deposited: 1983-06-20 Released: 1983-10-27
Deposition Author(s): Watson, H.C., Campbell, J.C.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.50 Å
R-Value Work:
0.330 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.4 of the entry. See complete history.

Literature

Twinning in crystals of human skeletal muscle D-glyceraldehyde-3-phosphate dehydrogenase.

Mercer, W.D., Winn, S.I., Watson, H.C.

(1976) J Mol Biology 104: 277-283

PubMed: 957435 Search on PubMed
DOI: https://doi.org/10.1016/0022-2836(76)90013-9
Primary Citation Related Structures:
3GPD

Macromolecule Content

Total Structure Weight: 73.56 kDa
Atom Count: 5,154
Modeled Residue Count: 668
Deposited Residue Count: 668
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE	A [auth R], B [auth G]	334	Homo sapiens	Mutation(s): 0 EC: 1.2.1.12 (PDB Primary Data), 2.6.99 (UniProt)
UniProt & NIH Common Fund Data Resources
Find proteins for P04406 (Homo sapiens) Explore P04406 Go to UniProtKB: P04406
PHAROS: P04406 GTEx: ENSG00000111640
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P04406
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
NAD Query on NAD Download:Ideal Coordinates CCD File SDF format, chain E [auth R] SDF format, chain H [auth G] MOL2 format, chain E [auth R] MOL2 format, chain H [auth G] mmCIF format, chain E [auth R] mmCIF format, chain H [auth G]	E [auth R], H [auth G]	NICOTINAMIDE-ADENINE-DINUCLEOTIDE C₂₁ H₂₇ N₇ O₁₄ P₂ BAWFJGJZGIEFAR-NNYOXOHSSA-N		Interactions Focus chain E [auth R] Focus chain H [auth G]
SO4 Query on SO4 Download:Ideal Coordinates CCD File SDF format, chain C [auth R] SDF format, chain D [auth R] SDF format, chain F [auth G] SDF format, chain G MOL2 format, chain C [auth R] MOL2 format, chain D [auth R] MOL2 format, chain F [auth G] MOL2 format, chain G mmCIF format, chain C [auth R] mmCIF format, chain D [auth R] mmCIF format, chain F [auth G] mmCIF format, chain G	C [auth R], D [auth R], F [auth G], G	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain C [auth R] Focus chain D [auth R] Focus chain F [auth G] Focus chain G

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.50 Å
R-Value Work: 0.330 (Depositor)

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 132.4	α = 90
b = 97.9	β = 114.3
c = 81.6	γ = 90

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 1983-10-27

Deposition Author(s):

Watson, H.C.

Campbell, J.C.

Revision History (Full details and data files)

Version 1.0: 1983-10-27
Type: Initial release
Version 1.1: 2008-03-03
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Derived calculations, Version format compliance
Version 1.3: 2017-11-29
Changes: Derived calculations, Other
Version 1.4: 2024-12-25
Changes: Advisory, Data collection, Database references, Derived calculations, Structure summary

3GPD | pdb_00003gpd

TWINNING IN CRYSTALS OF HUMAN SKELETAL MUSCLE D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE

Literature

Twinning in crystals of human skeletal muscle D-glyceraldehyde-3-phosphate dehydrogenase.

Biological Assembly 1

Macromolecules

Entity ID: 1

UniProt & NIH Common Fund Data Resources

Entity Groups

Sequence Annotations

Expand