3JZ7 | pdb_00003jz7

Crystal structure of the extracellular domains of coxsackie & adenovirus receptor from mouse (mCAR)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.19 Å
  • R-Value Free: 
    0.265 (Depositor), 0.278 (DCC) 
  • R-Value Work: 
    0.209 (Depositor), 0.218 (DCC) 
  • R-Value Observed: 
    0.212 (Depositor) 

Starting Models: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 3JZ7

This is version 1.4 of the entry. See complete history

Literature

The coxsackievirus-adenovirus receptor reveals complex homophilic and heterophilic interactions on neural cells.

Patzke, C.Max, K.E.Behlke, J.Schreiber, J.Schmidt, H.Dorner, A.A.Kroger, S.Henning, M.Otto, A.Heinemann, U.Rathjen, F.G.

(2010) J Neurosci 30: 2897-2910

  • DOI: https://doi.org/10.1523/JNEUROSCI.5725-09.2010
  • Primary Citation Related Structures: 
    3JZ7

  • PubMed Abstract: 

    The coxsackievirus-adenovirus receptor (CAR) is a member of the Ig superfamily strongly expressed in the developing nervous system. Our histological investigations during development reveal an initial uniform distribution of CAR on all neural cells with a concentration on membranes that face the margins of the nervous system (e.g., the basal laminae and the ventricular side). At more advanced stages, CAR becomes downregulated and restricted to specific regions including areas rich in axonal and dendritic surfaces. To study the function of CAR on neural cells, we used the fiber knob of the adenovirus, extracellular CAR domains, blocking antibodies to CAR, as well as CAR-deficient neural cells. Blocking antibodies were found to inhibit neurite extension in retina organ and retinal explant cultures, whereas the application of the recombinant fiber knob of the adenovirus subtype Ad2 or extracellular CAR domains promoted neurite extension and adhesion to extracellular matrices. We observed a promiscuous interaction of CAR with extracellular matrix glycoproteins, which was deduced from analytical ultracentrifugation experiments, affinity chromatography, and adhesion assays. The membrane proximal Ig domain of CAR, termed D2, was found to bind to a fibronectin fragment, including the heparin-binding domain 2, which promotes neurite extension of wild type, but not of CAR-deficient neural cells. In contrast to heterophilic interactions, homophilic association of CAR involves both Ig domains, as was revealed by ultracentrifugation, chemical cross-linking, and adhesion studies. The results of these functional and binding studies are correlated to a U-shaped homodimer of the complete extracellular domains of CAR detected by x-ray crystallography.


  • Organizational Affiliation
    • Max-Delbrück-Centrum für Molekulare Medizin, Berlin, Germany.

Macromolecule Content 

  • Total Structure Weight: 23.85 kDa 
  • Atom Count: 1,782 
  • Modeled Residue Count: 209 
  • Deposited Residue Count: 214 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Coxsackievirus and adenovirus receptor homolog214Mus musculusMutation(s): 0 
Gene Names: CarCxadr
UniProt & NIH Common Fund Data Resources
Find proteins for P97792 (Mus musculus)
Explore P97792 
Go to UniProtKB:  P97792
IMPC:  MGI:1201679
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP97792
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.19 Å
  • R-Value Free:  0.265 (Depositor), 0.278 (DCC) 
  • R-Value Work:  0.209 (Depositor), 0.218 (DCC) 
  • R-Value Observed: 0.212 (Depositor) 
Space Group: P 21 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 53.369α = 90
b = 61.468β = 90
c = 86.355γ = 90
Software Package:
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
PHASERphasing
REFMACrefinement
PDB_EXTRACTdata extraction
MAR345dtbdata collection
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2010-03-16
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2017-11-01
    Changes: Refinement description
  • Version 1.3: 2023-09-06
    Changes: Data collection, Database references, Derived calculations, Refinement description
  • Version 1.4: 2024-11-06
    Changes: Structure summary