Download MendeleySystematic stability engineering of single-chain antibodies
Wilton, R., Londer, Y.Y., Hanson, D.K., Zerbs, S., Dirks, A., Warner, C., Carney, J.P., Pokkuluri, P.R., Stevens, F.J.To be published.
3UMT
scFv12, Anti-BclA antibody single chain variable fragment
- PDB DOI: https://doi.org/10.2210/pdb3UMT/pdb
- Classification: IMMUNE SYSTEM
- Organism(s): Mus musculus
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2011-11-14 Released: 2012-11-14
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.223
- R-Value Work: 0.175
- R-Value Observed: 0.177
Starting Models: experimental
View more details
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| scFv heavy chain and light chain | 256 | Mus musculus | Mutation(s): 0 |  | |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NHE Query on NHE | B [auth A] | 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID C8 H17 N O3 S MKWKNSIESPFAQN-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.223
- R-Value Work: 0.175
- R-Value Observed: 0.177
- Space Group: P 31 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 65.29 | α = 90 |
| b = 65.29 | β = 90 |
| c = 96.202 | γ = 120 |
| Software Name | Purpose |
|---|---|
| HKL-3000 | data collection |
| PHASER | phasing |
| PHENIX | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
Entry History
Deposition Data
- Released Date: 2012-11-14 Deposition Author(s): Pokkuluri, P.R.
Revision History (Full details and data files)
- Version 1.0: 2012-11-14
Type: Initial release - Version 1.1: 2023-09-13
Changes: Data collection, Database references, Derived calculations, Refinement description - Version 1.2: 2024-10-30
Changes: Structure summary
