Download MendeleyFlexibility of the Flap in the Active Site of BACE1 as Revealed by Crystal Structures and MD simulations
Xu, Y.C., Chen, W.Y., Chen, T.T.To be published.
3UQW
Crystal structure of BACE1 with its inhibitor
- PDB DOI: https://doi.org/10.2210/pdb3UQW/pdb
- Classification: HYDROLASE/HYDROLASE INHIBITOR
- Organism(s): Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2011-11-21 Released: 2012-11-21
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.215
- R-Value Work: 0.169
- R-Value Observed: 0.171
Starting Model: experimental
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This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Beta-secretase 1 | 433 | Homo sapiens | Mutation(s): 2 Gene Names: BACE1 EC: 3.4.23.46 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P56817 (Homo sapiens) Explore P56817 Go to UniProtKB: P56817 | |||||
PHAROS: P56817 GTEx: ENSG00000186318 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P56817 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ZPY Query on ZPY | B [auth A] | ethyl 1-{(2S,3S)-3-[(3-{[(1R)-1-(4-fluorophenyl)ethyl]carbamoyl}-5-[methyl(methylsulfonyl)amino]benzoyl)amino]-2-hydroxy-4-phenylbutyl}-1H-pyrazole-4-carboxylate C34 H38 F N5 O7 S MTFQLBNDNYIGHD-OJXBSAKDSA-N |  | ||
| SO4 Query on SO4 | C [auth A], D [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.215
- R-Value Work: 0.169
- R-Value Observed: 0.171
- Space Group: C 2 2 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 107.315 | α = 90 |
| b = 131.544 | β = 90 |
| c = 78.541 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SCALEPACK | data scaling |
| PHASER | phasing |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| ADSC | data collection |
| HKL-2000 | data reduction |
Entry History
Deposition Data
- Released Date: 2012-11-21 Deposition Author(s): Chen, T.T., Chen, W.Y., Xu, Y.C.
Revision History (Full details and data files)
- Version 1.0: 2012-11-21
Type: Initial release - Version 1.1: 2023-11-08
Changes: Data collection, Database references, Derived calculations, Refinement description - Version 1.2: 2024-10-30
Changes: Structure summary
