Download MendeleyThe Crystal Structure of the Major Birch Pollen Allergen Bet V 1 After Nitration with Peroxinitrite
Kofler, S.G., Ackaert, C., Brandstetter, H.To be published.
4BTZ
Crystal Structure of peroxinitrite treated Major Birch Pollen Allergen Bet v 1.0101 (isoform a)
- PDB DOI: https://doi.org/10.2210/pdb4BTZ/pdb
- Classification: IMMUNE SYSTEM
- Organism(s): Betula pendula
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2013-06-19 Released: 2014-07-02
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.47 Å
- R-Value Free: 0.235
- R-Value Work: 0.188
- R-Value Observed: 0.190
Starting Model: experimental
View more details
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| MAJOR POLLEN ALLERGEN BET V 1-A | 159 | Betula pendula | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for P15494 (Betula pendula) Explore P15494 Go to UniProtKB: P15494 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P15494 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MPD Query on MPD | B [auth A] | (4S)-2-METHYL-2,4-PENTANEDIOL C6 H14 O2 SVTBMSDMJJWYQN-YFKPBYRVSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| NIY Query on NIY | A | L-PEPTIDE LINKING | C9 H10 N2 O5 |  | TYR |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.47 Å
- R-Value Free: 0.235
- R-Value Work: 0.188
- R-Value Observed: 0.190
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 32.4 | α = 90 |
| b = 54.55 | β = 93.04 |
| c = 37.61 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| iMOSFLM | data reduction |
| SCALA | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2014-07-02 Deposition Author(s): Kofler, S.G., Ackaert, C., Brandstetter, H.
Revision History (Full details and data files)
- Version 1.0: 2014-07-02
Type: Initial release - Version 1.1: 2023-12-20
Changes: Data collection, Database references, Derived calculations, Other, Refinement description
