4HJH

Iodide SAD phased crystal structure of a phosphoglucomutase from Brucella melitensis complexed with glucose-6-phosphate


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free: 0.209 
  • R-Value Work: 0.174 
  • R-Value Observed: 0.175 

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Ligand Structure Quality Assessment 


This is version 1.3 of the entry. See complete history


Literature

Iodide SAD phased crystal structure of a phosphoglucomutase from Brucella melitensis complexed with glucose-6-phosphate

Fairman, J.W.Craig, T.K.Staker, B.L.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Phosphomannomutase
A, B
481Brucella melitensis bv. 1 str. 16MMutation(s): 0 
Gene Names: BAWG_1686
EC: 5.4.2.8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 4 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
G6Q
Query on G6Q

Download Ideal Coordinates CCD File 
IC [auth B],
TA [auth A]
GLUCOSE-6-PHOSPHATE
C6 H13 O9 P
VFRROHXSMXFLSN-SLPGGIOYSA-N
IOD
Query on IOD

Download Ideal Coordinates CCD File 
AA [auth A]
AC [auth B]
BA [auth A]
BC [auth B]
C [auth A]
AA [auth A],
AC [auth B],
BA [auth A],
BC [auth B],
C [auth A],
CA [auth A],
CB [auth B],
CC [auth B],
D [auth A],
DA [auth A],
DB [auth B],
DC [auth B],
E [auth A],
EA [auth A],
EB [auth B],
EC [auth B],
F [auth A],
FA [auth A],
FB [auth B],
FC [auth B],
G [auth A],
GA [auth A],
GB [auth B],
GC [auth B],
H [auth A],
HA [auth A],
HB [auth B],
HC [auth B],
I [auth A],
IA [auth A],
IB [auth B],
J [auth A],
JA [auth A],
JB [auth B],
K [auth A],
KA [auth A],
KB [auth B],
L [auth A],
LA [auth A],
LB [auth B],
M [auth A],
MA [auth A],
MB [auth B],
N [auth A],
NA [auth A],
NB [auth B],
O [auth A],
OA [auth A],
OB [auth B],
P [auth A],
PA [auth A],
PB [auth B],
Q [auth A],
QA [auth A],
QB [auth B],
R [auth A],
RA [auth A],
RB [auth B],
S [auth A],
SA [auth A],
SB [auth B],
T [auth A],
TB [auth B],
U [auth A],
UB [auth B],
V [auth A],
VB [auth B],
W [auth A],
WB [auth B],
X [auth A],
XB [auth B],
Y [auth A],
YB [auth B],
Z [auth A],
ZB [auth B]
IODIDE ION
I
XMBWDFGMSWQBCA-UHFFFAOYSA-M
EDO
Query on EDO

Download Ideal Coordinates CCD File 
AB [auth A]
JC [auth B]
UA [auth A]
VA [auth A]
WA [auth A]
AB [auth A],
JC [auth B],
UA [auth A],
VA [auth A],
WA [auth A],
XA [auth A],
YA [auth A],
ZA [auth A]
1,2-ETHANEDIOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
MG
Query on MG

Download Ideal Coordinates CCD File 
BB [auth A],
KC [auth B]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
SEP
Query on SEP
A, B
L-PEPTIDE LINKINGC3 H8 N O6 PSER
Experimental Data & Validation

Experimental Data

Unit Cell:
Length ( Å )Angle ( ˚ )
a = 61.95α = 90
b = 55.98β = 92.18
c = 131.67γ = 90
Software Package:
Software NamePurpose
XSCALEdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
PHASERphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2012-11-21
    Type: Initial release
  • Version 1.1: 2017-09-20
    Changes: Data collection
  • Version 1.2: 2017-10-11
    Changes: Data collection
  • Version 1.3: 2024-11-27
    Changes: Data collection, Database references, Derived calculations, Refinement description, Structure summary