Structure of a putative peptidoglycan glycosyltransferase from Atopobium parvulum in complex with cephalothin
Filippova, E.V., Minasov, G., Kiryukhina, O., Clancy, S., Joachimiak, A., Anderson, W.F.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Peptidoglycan glycosyltransferase | 482 | Lancefieldella parvula DSM 20469 | Mutation(s): 0  Gene Names: Apar_1344 EC: 2.4.1.129 | ||
UniProt | |||||
Find proteins for C8W8H7 (Lancefieldella parvula (strain ATCC 33793 / DSM 20469 / CCUG 32760 / JCM 10300 / KCTC 3663 / VPI 0546 / 1246)) Explore C8W8H7  Go to UniProtKB:  C8W8H7 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | C8W8H7 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
CEP Query on CEP | C [auth A], F [auth B] | CEPHALOTHIN GROUP C16 H18 N2 O6 S2 UUWFGEKEQSCSMB-IAQYHMDHSA-N | |||
B3P Query on B3P | E [auth A], H [auth B] | 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL C11 H26 N2 O6 HHKZCCWKTZRCCL-UHFFFAOYSA-N | |||
SCN Query on SCN | D [auth A], G [auth B] | THIOCYANATE ION C N S ZMZDMBWJUHKJPS-UHFFFAOYSA-M |
Modified Residues 1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se | MET |
Length ( Å ) | Angle ( ˚ ) |
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a = 68.553 | α = 90 |
b = 70.002 | β = 96.76 |
c = 115.233 | γ = 90 |
Software Name | Purpose |
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Blu-Ice | data collection |
PHASER | phasing |
REFMAC | refinement |
HKL-2000 | data reduction |
HKL-2000 | data scaling |