Download MendeleyCrystal structure of the murine cd44 hyaluronan binding domain complex with a small molecule
Liu, L.K., Finzel, B.C.To be published.
5BZG
Crystal structure of the murine CD44 hyaluronan binding domain complex with a small molecule
- PDB DOI: https://doi.org/10.2210/pdb5BZG/pdb
- Classification: PROTEIN BINDING
- Organism(s): Mus musculus
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): Yes
- Deposited: 2015-06-11 Released: 2016-06-29
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.19 Å
- R-Value Free: 0.242
- R-Value Work: 0.191
- R-Value Observed: 0.194
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| CD44 antigen | 151 | Mus musculus | Mutation(s): 2 Gene Names: Cd44, Ly-24 |  | |
UniProt | |||||
Find proteins for P15379 (Mus musculus) Explore P15379 Go to UniProtKB: P15379 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P15379 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| 4X6 Query on 4X6 | C [auth A] | 2-methyl-1,2,3,4-tetrahydroisoquinolin-5-amine C10 H14 N2 OXWNTTVDTPIYRD-UHFFFAOYSA-N |  | ||
| SO4 Query on SO4 | D [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| DMS Query on DMS | B [auth A] | DIMETHYL SULFOXIDE C2 H6 O S IAZDPXIOMUYVGZ-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.19 Å
- R-Value Free: 0.242
- R-Value Work: 0.191
- R-Value Observed: 0.194
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 30.987 | α = 90 |
| b = 81.744 | β = 118.205 |
| c = 32.236 | γ = 90 |
| Software Name | Purpose |
|---|---|
| XSCALE | data scaling |
| PHASER | phasing |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
Entry History
Deposition Data
- Released Date: 2016-06-29 Deposition Author(s): Liu, L.K., Finzel, B.C.
Revision History (Full details and data files)
- Version 1.0: 2016-06-29
Type: Initial release - Version 1.1: 2017-10-11
Changes: Data collection, Database references, Derived calculations
