5DO7

Crystal Structure of the Human Sterol Transporter ABCG5/ABCG8


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.93 Å
  • R-Value Free: 0.329 
  • R-Value Work: 0.245 
  • R-Value Observed: 0.250 

wwPDB Validation   3D Report Full Report


This is version 1.5 of the entry. See complete history


Literature

Crystal structure of the human sterol transporter ABCG5/ABCG8.

Lee, J.Y.Kinch, L.N.Borek, D.M.Wang, J.Wang, J.Urbatsch, I.L.Xie, X.S.Grishin, N.V.Cohen, J.C.Otwinowski, Z.Hobbs, H.H.Rosenbaum, D.M.

(2016) Nature 533: 561-564

  • DOI: https://doi.org/10.1038/nature17666
  • Primary Citation of Related Structures:  
    5DO7

  • PubMed Abstract: 

    ATP binding cassette (ABC) transporters play critical roles in maintaining sterol balance in higher eukaryotes. The ABCG5/ABCG8 heterodimer (G5G8) mediates excretion of neutral sterols in liver and intestines. Mutations disrupting G5G8 cause sitosterolaemia, a disorder characterized by sterol accumulation and premature atherosclerosis. Here we use crystallization in lipid bilayers to determine the X-ray structure of human G5G8 in a nucleotide-free state at 3.9 Å resolution, generating the first atomic model of an ABC sterol transporter. The structure reveals a new transmembrane fold that is present in a large and functionally diverse superfamily of ABC transporters. The transmembrane domains are coupled to the nucleotide-binding sites by networks of interactions that differ between the active and inactive ATPases, reflecting the catalytic asymmetry of the transporter. The G5G8 structure provides a mechanistic framework for understanding sterol transport and the disruptive effects of mutations causing sitosterolaemia.


  • Organizational Affiliation

    Eugene McDermott Center for Human Growth and Development, University of Texas Southwestern Medical Center at Dallas, Dallas, Texas 75390, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
ATP-binding cassette sub-family G member 5A,
D [auth C]
666Homo sapiensMutation(s): 1 
Gene Names: ABCG5
EC: 7.6.2
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for Q9H222 (Homo sapiens)
Explore Q9H222 
Go to UniProtKB:  Q9H222
PHAROS:  Q9H222
GTEx:  ENSG00000138075 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9H222
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
ATP-binding cassette sub-family G member 8B,
C [auth D]
685Homo sapiensMutation(s): 0 
Gene Names: ABCG8
EC: 7.6.2
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for Q9H221 (Homo sapiens)
Explore Q9H221 
Go to UniProtKB:  Q9H221
PHAROS:  Q9H221
GTEx:  ENSG00000143921 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9H221
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.93 Å
  • R-Value Free: 0.329 
  • R-Value Work: 0.245 
  • R-Value Observed: 0.250 
  • Space Group: I 2 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 173.552α = 90
b = 224.804β = 90
c = 253.304γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
HKL-3000data reduction
HKL-3000data scaling
MLPHAREphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Heart, Lung, and Blood Institute (NIH/NHLBI)United StatesHL72304
National Institutes of Health/National Heart, Lung, and Blood Institute (NIH/NHLBI)United StatesP01-HL20948
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM113050
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM053163
American Heart AssociationUnited States0825285F
American Heart AssociationUnited States0463130Y

Revision History  (Full details and data files)

  • Version 1.0: 2016-05-11
    Type: Initial release
  • Version 1.1: 2016-05-25
    Changes: Database references
  • Version 1.2: 2016-06-08
    Changes: Database references
  • Version 1.3: 2017-09-27
    Changes: Author supporting evidence, Database references, Derived calculations
  • Version 1.4: 2019-12-04
    Changes: Author supporting evidence
  • Version 1.5: 2024-03-06
    Changes: Data collection, Database references, Refinement description