Download MendeleyCocrystal structure of cAMP-dependent Protein Kinase (PKA) in complex with different Fasudil-derivatives
Wienen-Schmidt, B., Jonker, H., Gerber, H.-D., Saxena, K., Kudlinzki, D., Sreeramulu, S., Heine, A., Schwalbe, H., Klebe, G.To be published.
5M6V
Cocrystal structure of cAMP-dependent Protein Kinase (PKA) in complex with a double methylated Fasudil-derivative
- PDB DOI: https://doi.org/10.2210/pdb5M6V/pdb
- Classification: TRANSFERASE
- Organism(s): Cricetulus griseus, Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2016-10-26 Released: 2018-06-06
- Funding Organization(s): European Research Council
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.42 Å
- R-Value Free: 0.174
- R-Value Work: 0.143
- R-Value Observed: 0.145
Starting Model: experimental
View more details
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| cAMP-dependent protein kinase catalytic subunit alpha | 353 | Cricetulus griseus | Mutation(s): 0 Gene Names: PRKACA EC: 2.7.11.11 |  | |
UniProt | |||||
Find proteins for P25321 (Cricetulus griseus) Explore P25321 Go to UniProtKB: P25321 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P25321 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by: Sequence | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| cAMP-dependent protein kinase inhibitor alpha | 20 | Homo sapiens | Mutation(s): 0 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P61925 (Homo sapiens) Explore P61925 Go to UniProtKB: P61925 | |||||
PHAROS: P61925 GTEx: ENSG00000171033 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P61925 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| H52 Query on H52 | C [auth A] | (S)-2-METHYL-1-[(4-METHYL-5-ISOQUINOLINE)SULFONYL]-HOMOPIPERAZINE C16 H21 N3 O2 S AWDORCFLUJZUQS-ZDUSSCGKSA-N |  | ||
| Modified Residues 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| SEP Query on SEP | A | L-PEPTIDE LINKING | C3 H8 N O6 P |  | SER |
| TPO Query on TPO | A | L-PEPTIDE LINKING | C4 H10 N O6 P |  | THR |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.42 Å
- R-Value Free: 0.174
- R-Value Work: 0.143
- R-Value Observed: 0.145
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 58.537 | α = 90 |
| b = 73.183 | β = 90 |
| c = 108.847 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| XDS | data reduction |
| XDS | data scaling |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2018-06-06 Deposition Author(s): Wienen-Schmidt, B., Heine, A., Klebe, G.
| Funding Organization | Location | Grant Number |
|---|---|---|
| European Research Council | Belgium | 268145 - Project Acronym: DrugProfilBind |
Revision History (Full details and data files)
- Version 1.0: 2018-06-06
Type: Initial release - Version 1.1: 2024-01-17
Changes: Data collection, Database references, Refinement description - Version 1.2: 2024-11-13
Changes: Structure summary
