5SO9

PanDDA analysis group deposition -- Crystal Structure of Pseudomonas Aeruginosa FabF-C164Q mutant protein in complex with Z1622626423

• PDB DOI: https://doi.org/10.2210/pdb5SO9/pdb
• Deposition Group: G_1002234 (changed state) ExploreG_1002234

• Classification: TRANSFERASE
• Organism(s): Pseudomonas aeruginosa
• Expression System: Escherichia coli
• Mutation(s): Yes 


• Deposited: 2022-05-30 Released: 2023-12-20 
• Deposition Author(s): Brenk, R., Georgiou, C.
• Funding Organization(s): Research Council of Norway, Research Council of Norway (RCN) through the NORCRYST, Research Council of Norway (RCN) through the NOR-OPENSCREEN

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.51 Å
• R-Value Free: 0.210 
• R-Value Work: 0.178 
• R-Value Observed: 0.179 

Literature

PanDDA analysis group deposition

Georgiou, C., Espeland, L.O., Bukya, H., Yadrykhinsky, V., Haug, B.E., Mainkar, P., Brenk, R.

(2023) ChemRxiv 

• DOI: https://doi.org/10.26434/chemrxiv-2023-cwk25

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 88.24 kDa 
• Atom Count: 6,724 
• Modelled Residue Count: 824 
• Deposited Residue Count: 828 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
3-oxoacyl-[acyl-carrier-protein] synthase 2	A, B	414	Pseudomonas aeruginosa	Mutation(s): 1  Gene Names: fabF EC: 2.3.1.179
UniProt
Find proteins for G3XDA2 (Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)) Explore G3XDA2  Go to UniProtKB:  G3XDA2

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
Q76 (Subject of Investigation/LOI)	F [auth B]	N-[3-(trifluoromethyl)-1H-pyrazol-5-yl]-L-alaninamide C7 H9 F3 N4 O OAGUFEGPGQTLPR-UHFFFAOYSA-N
PO4	N [auth B]	PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K
DMS	C [auth A], D [auth A], E [auth A], G [auth B], H [auth B], I [auth B], J [auth B], K [auth B], L [auth B], M [auth B]	DIMETHYL SULFOXIDE C2 H6 O S IAZDPXIOMUYVGZ-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.51 Å
• R-Value Free: 0.210 
• R-Value Work: 0.178 
• R-Value Observed: 0.179 
• Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 137.98	α = 90
b = 65.53	β = 93.51
c = 84.29	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
Aimless	data scaling
PDB_EXTRACT	data extraction
XDS	data reduction
REFMAC	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2023-12-20 
Deposition Author(s): Brenk, R., Georgiou, C.

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Funding Organization	Location	Grant Number
Research Council of Norway	Norway	273588
Research Council of Norway (RCN) through the NORCRYST	Norway	245828
Research Council of Norway (RCN) through the NOR-OPENSCREEN	Norway	245922

Revision History  

• Version 1.0: 2023-12-20
  Type: Initial release
  
• Version 1.1: 2024-01-10
  Changes: Database references