6C6D | pdb_00006c6d

20mer crystal structure of CC chemokine 5 (CCL5)

PDB DOI: https://doi.org/10.2210/pdb6C6D/pdb

Classification: CYTOKINE
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2018-01-18 Released: 2019-01-23
Deposition Author(s): Liang, W.G., Tang, W.J.
Funding Organization(s): American Heart Association

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 5.50 Å
R-Value Free:
0.286 (Depositor), 0.299 (DCC)
R-Value Work:
0.248 (Depositor), 0.257 (DCC)
R-Value Observed:
0.250 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.2 of the entry. See complete history.

Literature

20mer crystal structure of CC chemokine 5 (CCL5)

Liang, W.G., Tang, W.J.

To be published.

Macromolecule Content

Total Structure Weight: 150.29 kDa
Atom Count: 10,284
Modeled Residue Count: 1,264
Deposited Residue Count: 1,300
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
C-C motif chemokine 5	A B C D E A, B, C, D, E, F, G, H, I, J, K, L, M [auth S], N [auth T], O [auth M], P [auth N], Q [auth O], R [auth P], S [auth Q], T [auth R]	65	Homo sapiens	Mutation(s): 0 Gene Names: CCL5, D17S136E, SCYA5
UniProt & NIH Common Fund Data Resources
Find proteins for P13501 (Homo sapiens) Explore P13501 Go to UniProtKB: P13501
PHAROS: P13501 GTEx: ENSG00000271503
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P13501
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 5.50 Å
R-Value Free: 0.286 (Depositor), 0.299 (DCC)
R-Value Work: 0.248 (Depositor), 0.257 (DCC)
R-Value Observed: 0.250 (Depositor)

Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 119.866	α = 90
b = 322.783	β = 90
c = 157.512	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-3000	data reduction
HKL-2000	data scaling
PHASER	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2019-01-23

Deposition Author(s):

Funding Organization	Location	Grant Number
American Heart Association	United States	17GRNT33400028

Revision History (Full details and data files)

Version 1.0: 2019-01-23
Type: Initial release
Version 1.1: 2023-10-04
Changes: Data collection, Database references, Refinement description
Version 1.2: 2024-11-06
Changes: Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.