Structural insights into nucleophile substrate specificity in variants of N-Serine hydroxymethyltransferase from Streptococcus thermophilus
Petrillo, G., Hernandez, K., Bujons, J., Clapes, P., Uson, I.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Serine hydroxymethyltransferase | A, B [auth C] | 416 | Streptococcus thermophilus | Mutation(s): 1  Gene Names: glyA, CDA68_00974, DID82_07515 EC: 2.1.2.1 | |
UniProt | |||||
Find proteins for Q5M0B4 (Streptococcus thermophilus (strain CNRZ 1066)) Explore Q5M0B4  Go to UniProtKB:  Q5M0B4 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q5M0B4 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
2BO (Subject of Investigation/LOI) Query on 2BO | D [auth A], F [auth C] | N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)-L-threonine C12 H19 N2 O8 P IZWQBQLGLAKRMN-XCBNKYQSSA-N | |||
GOL (Subject of Investigation/LOI) Query on GOL | C [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
NA (Subject of Investigation/LOI) Query on NA | E [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 114.708 | α = 90 |
b = 114.708 | β = 90 |
c = 192.063 | γ = 90 |
Software Name | Purpose |
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REFMAC | refinement |
SCALEPACK | data scaling |
PDB_EXTRACT | data extraction |
XPREP | data reduction |
PHASER | phasing |
Funding Organization | Location | Grant Number |
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Spanish Ministry of Economy and Competitiveness | Spain | -- |