6UI5 | pdb_00006ui5

Tmn9 in complex with cofactor FAD

• PDB DOI: https://doi.org/10.2210/pdb6UI5/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Streptomyces sp. NRRL 11266
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2019-09-30 Released: 2020-10-07 
• Deposition Author(s): Paiva, F.C.R., Little, R., Leadlay, P., Dias, M.V.B.
• Funding Organization(s): Sao Paulo Research Foundation (FAPESP), Brazilian National Council for Scientific and Technological Development (CNPq)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.40 Å
• R-Value Free: 
  0.249 (Depositor), 0.251 (DCC) 
• R-Value Work: 
  0.203 (Depositor), 0.206 (DCC) 
• R-Value Observed: 
  0.205 (Depositor) 

Starting Model: experimental

Literature

Tmn9 in complex with cofactor FAD

Paiva, F.C.R., Little, R., Leadlay, P., Dias, M.V.B.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content 

• Total Structure Weight: 110.24 kDa 
• Atom Count: 7,728 
• Modeled Residue Count: 994 
• Deposited Residue Count: 1,000 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
2-polyprenyl-6-methoxyphenol hydroxylase-like FAD-dependent oxidoreductase	A, B	500	Streptomyces sp. NRRL 11266	Mutation(s): 0
UniProt
Find proteins for Q1MX79 (Streptomyces sp. NRRL 11266) Explore Q1MX79  Go to UniProtKB:  Q1MX79

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
FAD	C [auth A], D [auth B]	FLAVIN-ADENINE DINUCLEOTIDE C27 H33 N9 O15 P2 VWWQXMAJTJZDQX-UYBVJOGSSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.40 Å
• R-Value Free:  0.249 (Depositor), 0.251 (DCC) 
• R-Value Work:  0.203 (Depositor), 0.206 (DCC) 
• R-Value Observed: 0.205 (Depositor) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 61.205	α = 90
b = 85.605	β = 90
c = 207.683	γ = 90

Software Package:

Software Name	Purpose
Aimless	data scaling
PHENIX	refinement
PDB_EXTRACT	data extraction
XDS	data reduction
PHASER	phasing

Structure Validation

Entry History 

& Funding Information

Deposition Data

• Released Date: 2020-10-07 
Deposition Author(s): Paiva, F.C.R., Little, R., Leadlay, P., Dias, M.V.B.

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Funding Organization	Location	Grant Number
Sao Paulo Research Foundation (FAPESP)	Brazil	2018/003511
Brazilian National Council for Scientific and Technological Development (CNPq)	Brazil	141090/2016-2

Revision History  

• Version 1.0: 2020-10-07
  Type: Initial release
  
• Version 1.1: 2023-10-11
  Changes: Data collection, Database references, Refinement description