Download MendeleyCrystal structure of SARS-CoV-2 main protease (Mpro) in complex with the HCV NS3/4A inhibitor boceprevir
Zhang, L., Hilgenfeld, R.To be published.
7NBR
Crystal structure of SARS-CoV-2 main protease (Mpro) in complex with the HCV NS3/4A inhibitor boceprevir
- PDB DOI: https://doi.org/10.2210/pdb7NBR/pdb
- Classification: VIRAL PROTEIN
- Organism(s): Severe acute respiratory syndrome coronavirus 2
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2021-01-27 Released: 2021-03-03
- Funding Organization(s): European Commission
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.40 Å
- R-Value Free: 0.269
- R-Value Work: 0.180
Starting Model: experimental
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This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 3C-like proteinase | A [auth AAA] | 306 | Severe acute respiratory syndrome coronavirus 2 | Mutation(s): 0 Gene Names: rep, 1a-1b EC: 3.4.22.69 |  |
UniProt | |||||
Find proteins for P0DTD1 (Severe acute respiratory syndrome coronavirus 2) Explore P0DTD1 Go to UniProtKB: P0DTD1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P0DTD1 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| U5G (Subject of Investigation/LOI) Query on U5G | B [auth AAA] | boceprevir (bound form) C27 H47 N5 O5 FEBWCINGHXXUCV-GFLQDLJJSA-N |  | ||
| CL Query on CL | C [auth AAA] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
Biologically Interesting Molecules (External Reference) 1 Unique
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| ID | Chains | Name | Type/Class | 2D Diagram | 3D Interactions |
| PRD_002382 (U5G) Query on PRD_002382 | B [auth AAA] | Boceprevir (bound form) | Peptide-like / Enzyme inhibitor | | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.40 Å
- R-Value Free: 0.269
- R-Value Work: 0.180
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 113.767 | α = 90 |
| b = 53.37 | β = 101.833 |
| c = 45.949 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| MOLREP | phasing |
| SCALA | data scaling |
Entry History & Funding Information
Deposition Data
- Released Date: 2021-03-03 Deposition Author(s): Zhang, L., Hilgenfeld, R.
| Funding Organization | Location | Grant Number |
|---|---|---|
| European Commission | European Union | SCORE |
Revision History (Full details and data files)
- Version 1.0: 2021-03-03
Type: Initial release - Version 1.1: 2021-04-21
Type: Coordinate replacement
Reason: Model completeness
Changes: Refinement description - Version 1.2: 2021-04-28
Changes: Source and taxonomy, Structure summary - Version 1.3: 2024-01-31
Changes: Data collection, Database references, Derived calculations, Refinement description - Version 1.4: 2024-10-23
Changes: Structure summary
