Skip to main content

 7NG0 | pdb_00007ng0

Crystal structure of N- and C-terminally truncated Geobacillus thermoleovorans nucleoid occlusion protein Noc


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.95 Å
  • R-Value Free: 
    0.288 (Depositor), 0.289 (DCC) 
  • R-Value Work: 
    0.267 (Depositor), 0.269 (DCC) 
  • R-Value Observed: 
    0.269 (Depositor) 

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

Validation slider image for 7NG0

This is version 1.3 of the entry. See complete history. 

Literature

CTP regulates membrane-binding activity of the nucleoid occlusion protein Noc.

Jalal, A.S.B., Tran, N.T., Wu, L.J., Ramakrishnan, K., Rejzek, M., Gobbato, G., Stevenson, C.E.M., Lawson, D.M., Errington, J., Le, T.B.K.

(2021) Mol Cell 81: 3623-3636.e6

  • DOI: https://doi.org/10.1016/j.molcel.2021.06.025
  • Primary Citation Related Structures: 
    7NFU, 7NG0

  • PubMed Abstract: 

    ATP- and GTP-dependent molecular switches are extensively used to control functions of proteins in a wide range of biological processes. However, CTP switches are rarely reported. Here, we report that a nucleoid occlusion protein Noc is a CTPase enzyme whose membrane-binding activity is directly regulated by a CTP switch. In Bacillus subtilis, Noc nucleates on 16 bp NBS sites before associating with neighboring non-specific DNA to form large membrane-associated nucleoprotein complexes to physically occlude assembly of the cell division machinery. By in vitro reconstitution, we show that (1) CTP is required for Noc to form the NBS-dependent nucleoprotein complex, and (2) CTP binding, but not hydrolysis, switches Noc to a membrane-active state. Overall, we suggest that CTP couples membrane-binding activity of Noc to nucleoprotein complex formation to ensure productive recruitment of DNA to the bacterial cell membrane for nucleoid occlusion activity.


  • Organizational Affiliation: 
    • Department of Molecular Microbiology, John Innes Centre, Norwich, NR4 7UH, UK.

Macromolecule Content 

  • Total Structure Weight: 26.49 kDa 
  • Atom Count: 1,520 
  • Modeled Residue Count: 199 
  • Deposited Residue Count: 228 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Nucleoid occlusion protein228Geobacillus thermoleovorans CCB_US3_UF5Mutation(s): 0 
Gene Names: noc, GTCCBUS3UF5_39100
UniProt
Find proteins for A0ABF7PFW1 (Geobacillus thermoleovorans CCB_US3_UF5)
Explore A0ABF7PFW1 
Go to UniProtKB:  A0ABF7PFW1
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0ABF7PFW1
Sequence Annotations
Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
SO4

Query on SO4



Download:Ideal Coordinates CCD File
B [auth A]SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.95 Å
  • R-Value Free:  0.288 (Depositor), 0.289 (DCC) 
  • R-Value Work:  0.267 (Depositor), 0.269 (DCC) 
  • R-Value Observed: 0.269 (Depositor) 
Space Group: C 2 2 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 105.067α = 90
b = 106.562β = 90
c = 42.215γ = 90
Software Package:
Software NamePurpose
Aimlessdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
DIALSdata reduction
PHASERphasing

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Royal SocietyUnited KingdomURF-R-201020
Wellcome TrustUnited Kingdom209500
Royal SocietyUnited KingdomRG150448
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBBS-E-J-000C0683

Revision History  (Full details and data files)

  • Version 1.0: 2021-02-17
    Type: Initial release
  • Version 1.1: 2021-07-28
    Changes: Database references
  • Version 1.2: 2021-09-15
    Changes: Database references
  • Version 1.3: 2024-01-31
    Changes: Data collection, Refinement description