8F2O

Phi-29 expanded, DNA-packaged fiberless prohead

• PDB DOI: https://doi.org/10.2210/pdb8F2O/pdb
• EM Map EMD-28824: EMDB EMDataResource

• Classification: VIRUS
• Organism(s): Bacillus phage phi29
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2022-11-08 Released: 2023-11-15 
• Deposition Author(s): Woodson, M.E., Morais, M.C., Jardine, P.J., Zhang, W.
• Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

---

Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 3.00 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

Scaffold Oligomers Control Prohead Expansion

Woodson, M.E., Morais, M.C., Prokhorov, N.S., Scott, S.D., Zhang, W., Choi, K.H., Jardine, P.J.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C5  (Explore in 3D)
Global Stoichiometry: Homo 235-mer - A235 

Biological assembly 1 assigned by authors and generated by (software)

Macromolecule Content

• Total Structure Weight: 2,345.06 kDa 
• Atom Count: 162,659 
• Modelled Residue Count: 20,645 
• Deposited Residue Count: 21,056 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Major capsid protein	A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, EA [auth e], F, FA [auth f], G, GA [auth g], H, HA [auth h], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, TA [auth t], U, UA [auth u], V, W, X, Y, Z	448	Bacillus phage phi29	Mutation(s): 0
UniProt
Find proteins for P13849 (Bacillus phage phi29) Explore P13849  Go to UniProtKB:  P13849

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 3.00 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

EM Software:

Task	Software Package	Version
RECONSTRUCTION	RELION	3.0
MODEL REFINEMENT	PHENIX	1.19

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2023-11-15 
Deposition Author(s): Woodson, M.E., Morais, M.C., Jardine, P.J., Zhang, W.

---

Funding Organization	Location	Grant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	GM122979

Revision History  

• Version 1.0: 2023-11-15
  Type: Initial release