8T4Y

Human HCN1 F186C S264C C309A bound to cAMP, reconstituted in LMNG + SPL


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.58 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structural basis for hyperpolarization-dependent opening of human HCN1 channel.

Burtscher, V.Mount, J.Huang, J.Cowgill, J.Chang, Y.Bickel, K.Chen, J.Yuan, P.Chanda, B.

(2024) Nat Commun 15: 5216-5216

  • DOI: https://doi.org/10.1038/s41467-024-49599-x
  • Primary Citation of Related Structures:  
    8T4M, 8T4Y, 8T50

  • PubMed Abstract: 

    Hyperpolarization and cyclic nucleotide (HCN) activated ion channels are critical for the automaticity of action potentials in pacemaking and rhythmic electrical circuits in the human body. Unlike most voltage-gated ion channels, the HCN and related plant ion channels activate upon membrane hyperpolarization. Although functional studies have identified residues in the interface between the voltage-sensing and pore domain as crucial for inverted electromechanical coupling, the structural mechanisms for this unusual voltage-dependence remain unclear. Here, we present cryo-electron microscopy structures of human HCN1 corresponding to Closed, Open, and a putative Intermediate state. Our structures reveal that the downward motion of the gating charges past the charge transfer center is accompanied by concomitant unwinding of the inner end of the S4 and S5 helices, disrupting the tight gating interface observed in the Closed state structure. This helix-coil transition at the intracellular gating interface accompanies a concerted iris-like dilation of the pore helices and underlies the reversed voltage dependence of HCN channels.


  • Organizational Affiliation

    Department of Anesthesiology, Washington University School of Medicine, Saint Louis, MO, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 1A,
B [auth D],
C,
D [auth B]
890Homo sapiensMutation(s): 3 
Gene Names: HCN1BCNG1
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for O60741 (Homo sapiens)
Explore O60741 
Go to UniProtKB:  O60741
PHAROS:  O60741
GTEx:  ENSG00000164588 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO60741
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.58 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.20
RECONSTRUCTIONcryoSPARC4.4

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of Neurological Disorders and Stroke (NIH/NINDS)United StatesNS101723
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM143440

Revision History  (Full details and data files)

  • Version 1.0: 2024-06-19
    Type: Initial release
  • Version 1.1: 2024-07-03
    Changes: Data collection, Database references