8WEQ | pdb_00008weq

p-hydroxybenzoate 3-monooxygenase

PDB DOI: https://doi.org/10.2210/pdb8WEQ/pdb

Classification: OXIDOREDUCTASE
Organism(s): Arthrobacter sp. PAMC25564
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2023-09-18 Released: 2024-09-18
Deposition Author(s): Kim, S.B., Park, H.H.
Funding Organization(s): National Research Foundation (NRF, Korea)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.29 Å
R-Value Free:
0.256 (Depositor), 0.250 (DCC)
R-Value Work:
0.196 (Depositor), 0.191 (DCC)

Starting Model: in silico
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Ligand Structure Quality Assessment

This is version 1.0 of the entry. See complete history.

Literature

Structure of p-hydroxybenzoate 3-monooxygenase

Kim, S.B., Park, H.H.

To be published.

Macromolecule Content

Total Structure Weight: 179.24 kDa
Atom Count: 12,603
Modeled Residue Count: 1,576
Deposited Residue Count: 1,584
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
4-hydroxybenzoate 3-monooxygenase	A [auth C], B [auth A], C [auth B], D	396	Arthrobacter sp. PAMC25564	Mutation(s): 0 Gene Names: E5206_03645

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
FAD (Subject of Investigation/LOI) Query on FAD Download:Ideal Coordinates CCD File SDF format, chain E [auth C] SDF format, chain F [auth A] SDF format, chain G [auth B] MOL2 format, chain E [auth C] MOL2 format, chain F [auth A] MOL2 format, chain G [auth B] mmCIF format, chain E [auth C] mmCIF format, chain F [auth A] mmCIF format, chain G [auth B]	E [auth C], F [auth A], G [auth B]	FLAVIN-ADENINE DINUCLEOTIDE C₂₇ H₃₃ N₉ O₁₅ P₂ VWWQXMAJTJZDQX-UYBVJOGSSA-N		Interactions Focus chain E [auth C] Focus chain F [auth A] Focus chain G [auth B] Interactions & Density Focus chain E [auth C] Focus chain F [auth A] Focus chain G [auth B]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.29 Å
R-Value Free: 0.256 (Depositor), 0.250 (DCC)
R-Value Work: 0.196 (Depositor), 0.191 (DCC)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 80.74	α = 90
b = 178.03	β = 116.167
c = 89.13	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
XDS	data scaling
PHENIX	phasing

Structure Validation

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Ligand Structure Quality Assessment

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Entry History

& Funding Information

Deposition Data

Released Date: 2024-09-18

Deposition Author(s):

Funding Organization	Location	Grant Number
National Research Foundation (NRF, Korea)	Korea, Republic Of	--

Revision History (Full details and data files)

Version 1.0: 2024-09-18
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.