8YN0

Crystal structure of NRG1C in complex with EDS1-SAG101-(ADPr-ATP)

• PDB DOI: https://doi.org/10.2210/pdb8YN0/pdb

• Classification: PLANT PROTEIN/HYDROLASE
• Organism(s): Arabidopsis thaliana
• Expression System: Spodoptera frugiperda
• Mutation(s): No 


• Deposited: 2024-03-10 Released: 2024-12-11 
• Deposition Author(s): Huang, S., Xiao, Y., Chai, J.
• Funding Organization(s): National Natural Science Foundation of China (NSFC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.49 Å
• R-Value Free: 0.238 
• R-Value Work: 0.199 
• R-Value Observed: 0.199 

Starting Model: experimental

Literature

Crystal structure of NRG1C in complex with EDS1-SAG101-(ADPr-ATP)

Huang, S., Xiao, Y., Chai, J.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 3-mer - A1B1C1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 3-mer - A1B1C1 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 363.57 kDa 
• Atom Count: 26,045 
• Modelled Residue Count: 3,111 
• Deposited Residue Count: 3,136 
• Unique protein chains: 3

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Protein EDS1	A [auth B], E [auth A]	617	Arabidopsis thaliana	Mutation(s): 0  Gene Names: EDS1, EDS1-90, EDS1A, At3g48090, T17F15.40
UniProt
Find proteins for Q9SU72 (Arabidopsis thaliana) Explore Q9SU72  Go to UniProtKB:  Q9SU72

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Senescence-associated carboxylesterase 101	B [auth E], C	536	Arabidopsis thaliana	Mutation(s): 0  Gene Names: SAG101, At5g14930, F2G14.50 EC: 3.1.1.1
UniProt
Find proteins for Q4F883 (Arabidopsis thaliana) Explore Q4F883  Go to UniProtKB:  Q4F883

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Probable disease resistance protein At5g66890	D [auth H], F [auth D]	415	Arabidopsis thaliana	Mutation(s): 0  Gene Names: At5g66890, MUD21.15
UniProt
Find proteins for Q9FKZ2 (Arabidopsis thaliana) Explore Q9FKZ2  Go to UniProtKB:  Q9FKZ2

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
APR (Subject of Investigation/LOI)	G [auth B], J [auth A]	ADENOSINE-5-DIPHOSPHORIBOSE C15 H23 N5 O14 P2 SRNWOUGRCWSEMX-KEOHHSTQSA-N
ATP (Subject of Investigation/LOI)	H [auth E], I [auth C]	ADENOSINE-5'-TRIPHOSPHATE C10 H16 N5 O13 P3 ZKHQWZAMYRWXGA-KQYNXXCUSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.49 Å
• R-Value Free: 0.238 
• R-Value Work: 0.199 
• R-Value Observed: 0.199 
• Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 91.521	α = 90
b = 154.914	β = 89.69
c = 171.11	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data scaling
HKL-2000	data reduction
PHENIX	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-12-11 
Deposition Author(s): Huang, S., Xiao, Y., Chai, J.

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Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	--

Revision History  

• Version 1.0: 2024-12-11
  Type: Initial release