Structure of DDB1/Cdk12/Cyclin K with molecular glue SR-4835
Anand, K., Schmitz, M., Geyer, M.To be published.
Experimental Data Snapshot
Starting Models: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA damage-binding protein 1 | 864 | Homo sapiens | Mutation(s): 0 Gene Names: DDB1, XAP1 | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q16531 (Homo sapiens) Explore Q16531 Go to UniProtKB: Q16531 | |||||
PHAROS: Q16531 GTEx: ENSG00000167986 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q16531 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Cyclin-dependent kinase 12 | 351 | Homo sapiens | Mutation(s): 0 Gene Names: CDK12, CRK7, CRKRS, KIAA0904 EC: 2.7.11.22 (PDB Primary Data), 2.7.11.23 (PDB Primary Data) | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9NYV4 (Homo sapiens) Explore Q9NYV4 Go to UniProtKB: Q9NYV4 | |||||
PHAROS: Q9NYV4 GTEx: ENSG00000167258 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9NYV4 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Cyclin-K | 268 | Homo sapiens | Mutation(s): 0 Gene Names: CCNK, CPR4 | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for O75909 (Homo sapiens) Explore O75909 Go to UniProtKB: O75909 | |||||
PHAROS: O75909 GTEx: ENSG00000090061 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | O75909 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
RMF (Subject of Investigation/LOI) Query on RMF | J [auth B], K [auth E], L [auth H] | ~{N}-[[5,6-bis(chloranyl)-1~{H}-benzimidazol-2-yl]methyl]-9-(1-methylpyrazol-4-yl)-2-morpholin-4-yl-purin-6-amine C21 H20 Cl2 N10 O FSELUFUYNUNZKD-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
TPO Query on TPO | B, E, H | L-PEPTIDE LINKING | C4 H10 N O6 P | THR |
Length ( Å ) | Angle ( ˚ ) |
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a = 249.521 | α = 90 |
b = 249.521 | β = 90 |
c = 218.535 | γ = 120 |
Software Name | Purpose |
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PHENIX | refinement |
PHENIX | refinement |
XDS | data reduction |
XDS | data scaling |
PHASER | phasing |
Funding Organization | Location | Grant Number |
---|---|---|
German Research Foundation (DFG) | Germany | EXC2151-390873048 |