9TA0 | pdb_00009ta0

Crystal structure of mosGCTL-3


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.38 Å
  • R-Value Free: 
    0.257 (Depositor), 0.261 (DCC) 
  • R-Value Work: 
    0.211 (Depositor), 0.216 (DCC) 
  • R-Value Observed: 
    0.213 (Depositor) 

Starting Model: experimental
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Ligand Structure Quality Assessment 


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Literature

Conserved dimerization architecture in C-type lectins from virus-vector mosquitoes.

Bertinelli, M.Jayachandran, R.B.Whitehead, J.Leyrat, C.V Clanner, A.Paesen, G.C.Renner, M.

(2026) FEBS J 

  • DOI: https://doi.org/10.1111/febs.70657
  • Primary Citation Related Structures: 
    9T9Z, 9TA0, 9TA8, 9TA9

  • PubMed Abstract: 

    C-type lectins (CTLs) play key roles in immunity and microbial carbohydrate recognition. In the vector-mosquito Aedes aegypti, the C-type lectin domain-single (CTLD-S) family comprises 34 soluble CTLs whose members are implicated in flavivirus dissemination and microbial homeostasis, yet their organization remains uncharacterized. We combine X-ray crystallography, small-angle X-ray scattering (SAXS), molecular dynamics, and machine learning-based structure prediction to characterize CTLs in Aedes aegypti. We determined the crystal structures of four representative CTLD-S proteins: mosGCTL-1, -3, -6, and -20. All crystals featured an identical homodimer arrangement, positioning both carbohydrate-binding sites on the same molecular face. Dimerization was confirmed in solution and AlphaFold predictions across the entire family indicated that dimer formation may be a unifying feature of CTLD-S proteins. For one mosGCTL structure, paucimannose glycans bound at a Ca 2+ -dependent site, demonstrating bidentate binding through one dimer. Machine learning-based predictions indicated hundreds of possible CTLD-S heterodimers may be viable, with wide-ranging implications for preferred glycan binding through one dimer. Our findings reveal a conserved dimeric arrangement among mosquito lectins that may underpin ligand recognition relevant to vector-pathogen interactions.


  • Organizational Affiliation
    • Division of Structural Biology, The Wellcome Centre for Human Genetics, University of Oxford, UK.

Macromolecule Content 

  • Total Structure Weight: 86.52 kDa 
  • Atom Count: 4,332 
  • Modeled Residue Count: 512 
  • Deposited Residue Count: 744 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
mosGCTL-3
A, B, C, D
186Aedes aegyptiMutation(s): 0 
UniProt
Find proteins for A0A6E8PJC1 (Aedes aegypti)
Explore A0A6E8PJC1 
Go to UniProtKB:  A0A6E8PJC1
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A6E8PJC1
Glycosylation
Glycosylation Sites: 1
Sequence Annotations
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Reference Sequence

Oligosaccharides

Help  
Entity ID: 2
MoleculeChains Length2D Diagram GlycosylationD Interactions
beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
E
3N-Glycosylation

Small Molecules

Ligands 2 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
NAG
(Subject of Investigation/LOI)

Query on NAG



Download:Ideal Coordinates CCD File
I [auth A],
P [auth C],
T [auth D]
2-acetamido-2-deoxy-beta-D-glucopyranose
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
CA

Query on CA



Download:Ideal Coordinates CCD File
F [auth A]
G [auth A]
H [auth A]
J [auth B]
K [auth B]
F [auth A],
G [auth A],
H [auth A],
J [auth B],
K [auth B],
L [auth B],
M [auth C],
N [auth C],
O [auth C],
Q [auth D],
R [auth D],
S [auth D]
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.38 Å
  • R-Value Free:  0.257 (Depositor), 0.261 (DCC) 
  • R-Value Work:  0.211 (Depositor), 0.216 (DCC) 
  • R-Value Observed: 0.213 (Depositor) 
Space Group: P 2 2 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 90.27α = 90
b = 81.09β = 90
c = 85.79γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
PHENIXrefinement
DIALSdata reduction
DIALSdata scaling
PHASERphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Wellcome TrustUnited Kingdom204703/Z/16/Z

Revision History  (Full details and data files)

  • Version 1.0: 2026-08-26
    Type: Initial release