5KJO | pdb_00005kjo

X-ray structure of PcCel45A expressed in Aspergillus nidullans

• PDB DOI: https://doi.org/10.2210/pdb5KJO/pdb

• Classification: HYDROLASE
• Organism(s): Phanerodontia chrysosporium
• Expression System: Aspergillus nidulans FGSC A4
• Mutation(s): No 


• Deposited: 2016-06-20 Released: 2017-06-21 
• Deposition Author(s): Godoy, A.S., Ramia, M.P., Camilo, C.M., Polikarpov, I.
• Funding Organization(s): Sao Paulo Research Foundation (FAPESP)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.47 Å
• R-Value Free: 
  0.172 (Depositor), 0.170 (DCC) 
• R-Value Work: 
  0.142 (Depositor), 0.140 (DCC) 
• R-Value Observed: 
  0.144 (Depositor) 

Starting Model: experimental

Literature

X-ray structure of PcCel45A expressed in Aspergillus nidullans

Godoy, A.S., Ramia, M.P., Camilo, C.M., Polikarpov, I.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 18.43 kDa 
• Atom Count: 1,533 
• Modelled Residue Count: 180 
• Deposited Residue Count: 180 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Endoglucanase V-like protein	A	180	Phanerodontia chrysosporium	Mutation(s): 0  Gene Names: egv
UniProt
Find proteins for B3Y002 (Phanerodontia chrysosporium) Explore B3Y002  Go to UniProtKB:  B3Y002

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
EDO	B [auth A], C [auth A], D [auth A], E [auth A]	1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.47 Å
• R-Value Free:  0.172 (Depositor), 0.170 (DCC) 
• R-Value Work:  0.142 (Depositor), 0.140 (DCC) 
• R-Value Observed: 0.144 (Depositor) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 45.624	α = 90
b = 58.588	β = 90
c = 63.675	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XDS	data scaling
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2017-06-21 
Deposition Author(s): Godoy, A.S., Ramia, M.P., Camilo, C.M., Polikarpov, I.

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Funding Organization	Location	Grant Number
Sao Paulo Research Foundation (FAPESP)	Brazil	2008/56255-9, 2009/52840-7, 2009/05328-9, 2011/19100-0 and 2011/20505-4

Revision History  

• Version 1.0: 2017-06-21
  Type: Initial release
  
• Version 1.1: 2019-04-17
  Changes: Author supporting evidence, Data collection
• Version 1.2: 2020-01-01
  Changes: Author supporting evidence
• Version 1.3: 2023-09-27
  Changes: Data collection, Database references, Refinement description
• Version 1.4: 2024-11-20
  Changes: Structure summary