6YTS | pdb_00006yts

Solution NMR structure of type-I ribosome-inactivating protein trichobakin (TBK)

• PDB DOI: https://doi.org/10.2210/pdb6YTS/pdb
• BMRB: 27989

• Classification: HYDROLASE
• Organism(s): Trichosanthes sp. Bac Kan 8-98
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2020-04-24 Released: 2020-05-06 
• Deposition Author(s): Britikov, V.V., Bocharov, E.V., Britikova, E.V., Le, T.B.T., Phan, C.V., Boyko, K.M., Arseniev, A.S., Usanov, S.A.
• Funding Organization(s): Russian Science Foundation

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 200 
• Conformers Submitted: 20 
• Selection Criteria: structures with the lowest energy 

Literature

Structure and dynamics of type-I ribosome-inactivating protein trichobakin (TBK)

Britikov, V.V., Bocharov, E.V., Britikova, E.V., Le, T.B.T., Phan, C.V., Boyko, K.M., Arseniev, A.S., Usanov, S.A.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: SAXS

Macromolecule Content

• Total Structure Weight: 27.22 kDa 
• Atom Count: 1,920 
• Modelled Residue Count: 247 
• Deposited Residue Count: 247 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Trichobakin	A	247	Trichosanthes sp. Bac Kan 8-98	Mutation(s): 0  Gene Names: TBK EC: 3.2.2.22
UniProt
Find proteins for Q9LRE3 (Trichosanthes sp. Bac Kan 8-98) Explore Q9LRE3  Go to UniProtKB:  Q9LRE3

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 200 
• Conformers Submitted: 20 
• Selection Criteria: structures with the lowest energy 

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2020-05-06 
Deposition Author(s): Britikov, V.V., Bocharov, E.V., Britikova, E.V., Le, T.B.T., Phan, C.V., Boyko, K.M., Arseniev, A.S., Usanov, S.A.

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Funding Organization	Location	Grant Number
Russian Science Foundation	Russian Federation	19-74-30014

Revision History  

• Version 1.0: 2020-05-06
  Type: Initial release
  
• Version 1.1: 2023-06-14
  Changes: Database references, Other
• Version 1.2: 2024-06-19
  Changes: Data collection, Database references