7E7A | pdb_00007e7a

Crystal structure of apo ENL YEATS domain T3 mutant

• PDB DOI: https://doi.org/10.2210/pdb7E7A/pdb

• Classification: TRANSCRIPTION
• Organism(s): Homo sapiens
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): Yes 


• Deposited: 2021-02-25 Released: 2021-07-07 
• Deposition Author(s): Li, Y., Li, H.
• Funding Organization(s): National Natural Science Foundation of China (NSFC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.64 Å
• R-Value Free: 
  0.230 (Depositor), 0.230 (DCC) 
• R-Value Work: 
  0.213 (Depositor), 0.210 (DCC) 
• R-Value Observed: 
  0.214 (Depositor) 

Starting Model: experimental

Literature

Crystal structure of ENL YEATS domain T1 mutant in complex with histone H3 acetylation at K27

Li, Y., Li, H.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: gel filtration

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Biological Assembly 3  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 3 assigned by authors.

Biological Assembly 4  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 4 assigned by authors.

Macromolecule Content

• Total Structure Weight: 73.31 kDa 
• Atom Count: 4,655 
• Modelled Residue Count: 550 
• Deposited Residue Count: 620 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Protein ENL	A, B, C, D	155	Homo sapiens	Mutation(s): 1  Gene Names: MLLT1, ENL, LTG19, YEATS1
UniProt & NIH Common Fund Data Resources
Find proteins for Q03111 (Homo sapiens) Explore Q03111  Go to UniProtKB:  Q03111
PHAROS:  Q03111 GTEx:  ENSG00000130382

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.64 Å
• R-Value Free:  0.230 (Depositor), 0.230 (DCC) 
• R-Value Work:  0.213 (Depositor), 0.210 (DCC) 
• R-Value Observed: 0.214 (Depositor) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 83.316	α = 90
b = 88.258	β = 90
c = 167.008	γ = 90

Software Package:

Software Name	Purpose
SCALEPACK	data scaling
PHENIX	refinement
PDB_EXTRACT	data extraction
HKL-2000	data reduction
MOLREP	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2021-07-07 
Deposition Author(s): Li, Y., Li, H.

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Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	91753203
National Natural Science Foundation of China (NSFC)	China	31725014
National Natural Science Foundation of China (NSFC)	China	31871283
National Natural Science Foundation of China (NSFC)	China	31922016

Revision History  

• Version 1.0: 2021-07-07
  Type: Initial release
  
• Version 1.1: 2023-11-29
  Changes: Data collection, Database references, Refinement description