Annotations: 11SU

Structure of Yarrowia lipolytica ORC-Cdc6 bound to 60bp segment of OriA-006 DNA

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
G, J [auth K], K [auth L]	PF09079	CDC6, C terminal winged helix domain (WHD_Cdc6)	CDC6, C terminal winged helix domain	The C terminal domain of CDC6 assumes a winged helix fold, with a five alpha-helical bundle (alpha15-alpha19) structure, backed on one side by three beta strands (beta6-beta8). It has been shown that this domain acts as a DNA-localisation factor, how ...	The C terminal domain of CDC6 assumes a winged helix fold, with a five alpha-helical bundle (alpha15-alpha19) structure, backed on one side by three beta strands (beta6-beta8). It has been shown that this domain acts as a DNA-localisation factor, however its exact function is, as yet, unknown. Putative functions include: (1) mediation of protein-protein interactions and (2) regulation of nucleotide binding and hydrolysis. Mutagenesis studies have shown that this domain is essential for appropriate Cdc6 activity [1].	Domain
G, J [auth K], K [auth L]	PF00004	ATPase family associated with various cellular activities (AAA) (AAA)	ATPase family associated with various cellular activities (AAA)	AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2].	Domain
E	PF13191	AAA ATPase domain (AAA_16)	AAA ATPase domain	This family of domains contain a P-loop motif that is characteristic of the AAA superfamily.	Domain
E	PF14630	Origin recognition complex (ORC) subunit 5 C-terminus (ORC5_C)	Origin recognition complex (ORC) subunit 5 C-terminus	This entry represents the C-terminus of origin recognition complex subunit 5 [1,2], which consists of a winged helix domain (WHD).	Domain
E	PF21639	ORC5, lid domain (ORC5_lid)	ORC5, lid domain	ORC5 is a component of the origin recognition complex (ORC) that binds origins of replication. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication. This is the lid domain, which with the N-terminal RecA-fold ...	ORC5 is a component of the origin recognition complex (ORC) that binds origins of replication. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication. This is the lid domain, which with the N-terminal RecA-fold domain, constitutes the well-known AAA+ domain [1].	Domain
D	PF13191	AAA ATPase domain (AAA_16)	AAA ATPase domain	This family of domains contain a P-loop motif that is characteristic of the AAA superfamily.	Domain
D	PF14629	Origin recognition complex (ORC) subunit 4 C-terminus (ORC4_C)	Origin recognition complex (ORC) subunit 4 C-terminus	-	Family
C	PF07034	Origin recognition complex (ORC) subunit 3 N-terminus (ORC3_N)	Origin recognition complex (ORC) subunit 3 N-terminus	This family represents the N-terminus (approximately 300 residues) of subunit 3 of the eukaryotic origin recognition complex (ORC). Origin recognition complex (ORC) is composed of six subunits that are essential for cell viability. They collectively ...	This family represents the N-terminus (approximately 300 residues) of subunit 3 of the eukaryotic origin recognition complex (ORC). Origin recognition complex (ORC) is composed of six subunits that are essential for cell viability. They collectively bind to the autonomously replicating sequence (ARS) in a sequence-specific manner and lead to the chromatin loading of other replication factors that are essential for initiation of DNA replication [1]. This domain is predicted to contain an AAA+ fold but lack the residues important for ATP hydrolysis, thus, it is called AAA+ like [2].	Domain
C	PF18137	Origin recognition complex winged helix C-terminal (WHD_ORC)	Origin recognition complex winged helix C-terminal	This is the C-terminal winged-helix (WH) DNA-binding domain of the origin recognition complex present in Drosophila melanogaster. The WH domain is responsible for recognizing origin sequences [1].	Domain
B	PF04084	Origin recognition complex subunit 2 RecA-like domain (RecA-like_ORC2)	Origin recognition complex subunit 2 RecA-like domain	All DNA replication initiation is driven by a single conserved eukaryotic initiator complex termed he origin recognition complex (ORC). The ORC is a six protein complex. This entry represents the RecA-like domain of ORC2 with no predicted ATPase acti ...	All DNA replication initiation is driven by a single conserved eukaryotic initiator complex termed he origin recognition complex (ORC). The ORC is a six protein complex. This entry represents the RecA-like domain of ORC2 with no predicted ATPase activity [2].	Domain
A	PF21312	Origin recognition complex subunit 1 C-terminal winged HTH domain (WHD_ORC1)	Origin recognition complex subunit 1 C-terminal winged HTH domain	This entry represents the C-terminal winged helix-turn-helix domain found in the Origin recognition complex subunit 1 protein [1].	Domain
A	PF22606	Cdc6/ORC-like, ATPase lid domain (Cdc6-ORC-like_ATPase_lid)	Cdc6/ORC-like, ATPase lid domain	This entry represents the AAA+ ATPase lid domain of eukaryotic Cdc6/ORC proteins and its homologues from archaea [1-5].	Domain
A	PF00004	ATPase family associated with various cellular activities (AAA) (AAA)	ATPase family associated with various cellular activities (AAA)	AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
I [auth Y]	DNA (60-MER)	-	-	-
H [auth X]	DNA (60-MER)	-	-	-
G, J [auth K], K [auth L]	Cell division control protein 6 (Cdc6)	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding double-stranded DNA binding nucleic acid binding DNA replication origin binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity ATP-dependent activity	cellular response to stimulus regulation of cellular process regulation of cell cycle phase transition response to stimulus signaling G2/M transition of mitotic cell cycle negative regulation of biological process negative regulation of cell cycle cell cycle phase transition intracellular signal transduction mitotic cell cycle negative regulation of mitotic cell cycle cell communication mitotic G2/M transition checkpoint regulation of mitotic cell cycle cellular response to stimulus regulation of cellular process regulation of cell cycle phase transition response to stimulus signaling G2/M transition of mitotic cell cycle negative regulation of biological process negative regulation of cell cycle cell cycle phase transition intracellular signal transduction mitotic cell cycle negative regulation of mitotic cell cycle cell communication mitotic G2/M transition checkpoint regulation of mitotic cell cycle mitotic DNA integrity checkpoint signaling negative regulation of cellular process negative regulation of cell cycle phase transition signal transduction cell cycle DNA replication checkpoint signaling regulation of cell cycle cell cycle process cell cycle G2/M phase transition regulation of biological process mitotic DNA replication checkpoint signaling negative regulation of mitotic cell cycle phase transition regulation of G2/M transition of mitotic cell cycle regulation of cell cycle process biological regulation DNA integrity checkpoint signaling regulation of cell cycle G2/M phase transition negative regulation of cell cycle process cell cycle checkpoint signaling regulation of mitotic cell cycle phase transition mitotic cell cycle checkpoint signaling mitotic cell cycle process negative regulation of cell cycle G2/M phase transition cellular process negative regulation of G2/M transition of mitotic cell cycle mitotic cell cycle phase transition nucleobase-containing compound metabolic process DNA-templated DNA replication DNA replication DNA replication initiation metabolic process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure organelle nucleus intracellular membrane-bounded organelle
F	Origin recognition complex subunit 6 (Orc6)	DNA binding binding nucleic acid binding	nucleobase-containing compound metabolic process DNA replication metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process	membrane-bounded organelle protein-containing complex intracellular anatomical structure nuclear origin of replication recognition complex nucleus membrane-enclosed lumen intracellular membraneless organelle nuclear protein-containing complex nuclear chromosome chromosome intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle cellular anatomical structure membrane-bounded organelle protein-containing complex intracellular anatomical structure nuclear origin of replication recognition complex nucleus membrane-enclosed lumen intracellular membraneless organelle nuclear protein-containing complex nuclear chromosome chromosome intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle cellular anatomical structure origin recognition complex organelle lumen organelle membraneless organelle nuclear lumen
E	Origin recognition complex subunit 5 (Orc5)	DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding double-stranded DNA binding binding nucleic acid binding DNA replication origin binding	nucleobase-containing compound metabolic process DNA-templated DNA replication DNA replication DNA replication initiation metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process	membrane-bounded organelle protein-containing complex intracellular anatomical structure nuclear origin of replication recognition complex nucleus membrane-enclosed lumen intracellular membraneless organelle nuclear protein-containing complex nuclear chromosome chromosome intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle cellular anatomical structure membrane-bounded organelle protein-containing complex intracellular anatomical structure nuclear origin of replication recognition complex nucleus membrane-enclosed lumen intracellular membraneless organelle nuclear protein-containing complex nuclear chromosome chromosome intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle cellular anatomical structure origin recognition complex organelle lumen organelle membraneless organelle nuclear lumen
D	Origin recognition complex subunit 4 (Orc4)	DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding double-stranded DNA binding binding nucleic acid binding DNA replication origin binding protein-macromolecule adaptor activity molecular adaptor activity	nucleobase-containing compound metabolic process DNA-templated DNA replication DNA replication DNA replication initiation metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process	membrane-bounded organelle protein-containing complex intracellular anatomical structure nuclear origin of replication recognition complex nucleus membrane-enclosed lumen intracellular membraneless organelle nuclear protein-containing complex nuclear chromosome chromosome intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle cellular anatomical structure membrane-bounded organelle protein-containing complex intracellular anatomical structure nuclear origin of replication recognition complex nucleus membrane-enclosed lumen intracellular membraneless organelle nuclear protein-containing complex nuclear chromosome chromosome intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle cellular anatomical structure origin recognition complex organelle lumen organelle membraneless organelle nuclear lumen
C	Origin recognition complex subunit 3 (Orc3)	DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding double-stranded DNA binding binding nucleic acid binding DNA replication origin binding	nucleobase-containing compound metabolic process DNA-templated DNA replication DNA replication DNA replication initiation metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process	membrane-bounded organelle DNA replication preinitiation complex protein-containing complex intracellular anatomical structure protein-DNA complex nucleus membrane-enclosed lumen nuclear protein-containing complex intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle cellular anatomical structure nucleoplasm organelle lumen membrane-bounded organelle DNA replication preinitiation complex protein-containing complex intracellular anatomical structure protein-DNA complex nucleus membrane-enclosed lumen nuclear protein-containing complex intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle cellular anatomical structure nucleoplasm organelle lumen organelle nuclear lumen pre-replicative complex nuclear pre-replicative complex nuclear origin of replication recognition complex intracellular membraneless organelle nuclear chromosome chromosome origin recognition complex membraneless organelle
B	Origin recognition complex subunit 2 (Orc2)	DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding double-stranded DNA binding binding nucleic acid binding DNA replication origin binding	nucleobase-containing compound metabolic process DNA replication metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process	membrane-bounded organelle protein-containing complex intracellular anatomical structure nuclear origin of replication recognition complex nucleus membrane-enclosed lumen intracellular membraneless organelle nuclear protein-containing complex nuclear chromosome chromosome intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle cellular anatomical structure membrane-bounded organelle protein-containing complex intracellular anatomical structure nuclear origin of replication recognition complex nucleus membrane-enclosed lumen intracellular membraneless organelle nuclear protein-containing complex nuclear chromosome chromosome intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle cellular anatomical structure origin recognition complex organelle lumen organelle membraneless organelle nuclear lumen
A	Origin recognition complex subunit 1 (Orc1)	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding double-stranded DNA binding nucleic acid binding DNA replication origin binding chromatin binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity ATP-dependent activity	cellular response to stimulus regulation of cellular process regulation of cell cycle phase transition response to stimulus signaling G2/M transition of mitotic cell cycle negative regulation of biological process negative regulation of cell cycle cell cycle phase transition intracellular signal transduction mitotic cell cycle negative regulation of mitotic cell cycle cell communication mitotic G2/M transition checkpoint regulation of mitotic cell cycle cellular response to stimulus regulation of cellular process regulation of cell cycle phase transition response to stimulus signaling G2/M transition of mitotic cell cycle negative regulation of biological process negative regulation of cell cycle cell cycle phase transition intracellular signal transduction mitotic cell cycle negative regulation of mitotic cell cycle cell communication mitotic G2/M transition checkpoint regulation of mitotic cell cycle mitotic DNA integrity checkpoint signaling negative regulation of cellular process negative regulation of cell cycle phase transition signal transduction cell cycle DNA replication checkpoint signaling regulation of cell cycle cell cycle process cell cycle G2/M phase transition regulation of biological process mitotic DNA replication checkpoint signaling negative regulation of mitotic cell cycle phase transition regulation of G2/M transition of mitotic cell cycle regulation of cell cycle process biological regulation DNA integrity checkpoint signaling regulation of cell cycle G2/M phase transition negative regulation of cell cycle process cell cycle checkpoint signaling regulation of mitotic cell cycle phase transition mitotic cell cycle checkpoint signaling mitotic cell cycle process negative regulation of cell cycle G2/M phase transition cellular process negative regulation of G2/M transition of mitotic cell cycle mitotic cell cycle phase transition DNA-templated DNA replication nuclear DNA replication cell cycle DNA replication primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process DNA replication metabolic process macromolecule metabolic process DNA replication initiation	intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle chromatin chromosome membrane-bounded organelle protein-containing complex nuclear origin of replication recognition complex nucleus membrane-enclosed lumen nuclear protein-containing complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle chromatin chromosome membrane-bounded organelle protein-containing complex nuclear origin of replication recognition complex nucleus membrane-enclosed lumen nuclear protein-containing complex nuclear chromosome intracellular membrane-bounded organelle intracellular organelle lumen origin recognition complex organelle lumen nuclear lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
G, J [auth K], K [auth L]	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
G, J [auth K], K [auth L]	IPR054425	Cdc6/ORC1-like, ATPase lid domain	Domain
G, J [auth K], K [auth L]	IPR015163	Cdc6, C-terminal	Domain
G, J [auth K], K [auth L]	IPR003593	AAA+ ATPase domain	Domain
G, J [auth K], K [auth L]	IPR003959	ATPase, AAA-type, core	Domain
G, J [auth K], K [auth L]	IPR050311	Origin recognition complex 1/Cell division control protein 6	Family
G, J [auth K], K [auth L]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
F	IPR008721	ORC6, first cyclin-like domain	Domain
F	IPR016811	Origin recognition complex, subunit 6, fungi	Family
E	IPR047088	Origin recognition complex subunit 5, C-terminal	Domain
E	IPR041664	Orc1-like, AAA ATPase domain	Domain
E	IPR048866	ORC5, lid domain	Domain
E	IPR020796	Origin recognition complex, subunit 5	Family
E	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
D	IPR041664	Orc1-like, AAA ATPase domain	Domain
D	IPR032705	Origin recognition complex subunit 4, C-terminal	Domain
D	IPR003593	AAA+ ATPase domain	Domain
D	IPR016527	Origin recognition complex subunit 4	Family
D	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
C	IPR020795	Origin recognition complex, subunit 3	Family
C	IPR040855	Origin recognition complex subunit 3, winged helix C-terminal	Domain
C	IPR045667	Origin recognition complex subunit 3, N-terminal	Domain
B	IPR056773	Origin recognition complex subunit 2, winged-helix domain	Domain
B	IPR056772	Origin recognition complex subunit 2, RecA-like domain	Domain
B	IPR007220	Origin recognition complex, subunit 2	Family
A	IPR043151	Bromo adjacent homology (BAH) domain superfamily	Homologous Superfamily
A	IPR054425	Cdc6/ORC1-like, ATPase lid domain	Domain
A	IPR001025	Bromo adjacent homology (BAH) domain	Domain
A	IPR003593	AAA+ ATPase domain	Domain
A	IPR048867	Origin recognition complex subunit 1, C-terminal domain	Domain
A	IPR003959	ATPase, AAA-type, core	Domain
A	IPR050311	Origin recognition complex 1/Cell division control protein 6	Family
A	IPR007111	NACHT nucleoside triphosphatase	Domain
A	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily

11SU | pdb_000011su

Structure of Yarrowia lipolytica ORC-Cdc6 bound to 60bp segment of OriA-006 DNA

External Resource: Annotation

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage