1B65

Structure of l-aminopeptidase d-ala-esterase/amidase from ochrobactrum anthropi, a prototype for the serine aminopeptidases, reveals a new variant among the ntn hydrolase fold


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilyDmpA-like 8024447 4002277 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyDmpA/ArgJ-like 8053797 3001033 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyDmpA/ArgJ-like 8036826 3001033 SCOP2 (2022-06-29)
BSCOP2B SuperfamilyDmpA/ArgJ-like 8053797 3001033 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyDmpA/ArgJ-like 8036826 3001033 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyDmpA/ArgJ-like 8053797 3001033 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyDmpA/ArgJ-like 8036826 3001033 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyDmpA/ArgJ-like 8036826 3001033 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyDmpA/ArgJ-like 8053797 3001033 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyDmpA/ArgJ-like 8053797 3001033 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyDmpA/ArgJ-like 8036826 3001033 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyDmpA/ArgJ-like 8053797 3001033 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyDmpA/ArgJ-like 8036826 3001033 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APeptidase_S58e1b65A1 A: a+b two layersX: MocoBD/DmpA-related (From Homology)H: MocoBD/DmpA-relatedT: DmpA/ArgJF: Peptidase_S58ECOD (1.6)
BPeptidase_S58e1b65B1 A: a+b two layersX: MocoBD/DmpA-related (From Homology)H: MocoBD/DmpA-relatedT: DmpA/ArgJF: Peptidase_S58ECOD (1.6)
CPeptidase_S58e1b65C1 A: a+b two layersX: MocoBD/DmpA-related (From Homology)H: MocoBD/DmpA-relatedT: DmpA/ArgJF: Peptidase_S58ECOD (1.6)
EPeptidase_S58e1b65E1 A: a+b two layersX: MocoBD/DmpA-related (From Homology)H: MocoBD/DmpA-relatedT: DmpA/ArgJF: Peptidase_S58ECOD (1.6)
FPeptidase_S58e1b65F1 A: a+b two layersX: MocoBD/DmpA-related (From Homology)H: MocoBD/DmpA-relatedT: DmpA/ArgJF: Peptidase_S58ECOD (1.6)
DPeptidase_S58e1b65D1 A: a+b two layersX: MocoBD/DmpA-related (From Homology)H: MocoBD/DmpA-relatedT: DmpA/ArgJF: Peptidase_S58ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF03576Peptidase family S58 (Peptidase_S58)Peptidase family S58- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
PROTEIN (AMINOPEPTIDASE) - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR005321Peptidase S58, DmpAFamily
A, B, C, D, E
IPR016117ArgJ-like domain superfamilyHomologous Superfamily

Structure Motif Annotation: Mechanism and Catalytic Site Atlas M-CSA Database Homepage

ChainsEnzyme NameDescriptionCatalytic Residues
D-stereospecific aminopeptidase (peptidase S58 family)  M-CSA #676

The L-aminopeptidase D-Ala-esterase/amidase from Ochrobactrum anthropi (DmpA) is an aminopeptidase which catalyses the release of N-terminal residues from peptides substrates. It also shows D-amidasic and D-esterasic activities on D-alanine derivatives. DmpA and other β-aminopeptidases are able to to cleave synthetic β-peptides, which consist of backbone-elongated β-amino acid residues that are not processed by common proteolytic enzymes. β-peptides are considered promising building blocks for the design of novel peptidomimetics,small protein-like chains to mimic peptides which are useful for drug design, thus these enzymes that cleave and release them are useful for production of peptidominetics.

Defined by 5 residues: TYR:A-146ASN:A-218SER:A-250SER:A-288GLY:A-289
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