1B7B
Carbamate kinase from Enterococcus faecalis
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1b7ba_ | Alpha and beta proteins (a/b) | Carbamate kinase-like | Carbamate kinase-like | Carbamate kinase | Carbamate kinase | (Enterococcus faecium ) [TaxId: 1352 ], | SCOPe (2.08) |
B | d1b7bb_ | Alpha and beta proteins (a/b) | Carbamate kinase-like | Carbamate kinase-like | Carbamate kinase | Carbamate kinase | (Enterococcus faecium ) [TaxId: 1352 ], | SCOPe (2.08) |
C | d1b7bc_ | Alpha and beta proteins (a/b) | Carbamate kinase-like | Carbamate kinase-like | Carbamate kinase | Carbamate kinase | (Enterococcus faecium ) [TaxId: 1352 ], | SCOPe (2.08) |
D | d1b7bd_ | Alpha and beta proteins (a/b) | Carbamate kinase-like | Carbamate kinase-like | Carbamate kinase | Carbamate kinase | (Enterococcus faecium ) [TaxId: 1352 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Carbamate kinase | 8020422 | 4000773 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Carbamate kinase-like | 8032802 | 3001310 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | Carbamate kinase-like | 8032802 | 3001310 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Carbamate kinase-like | 8032802 | 3001310 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Carbamate kinase-like | 8032802 | 3001310 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | AA_kinase | e1b7bA1 | A: a/b three-layered sandwiches | X: Carbamate kinase-like (From Topology) | H: Carbamate kinase-like (From Topology) | T: Carbamate kinase-like | F: AA_kinase | ECOD (1.6) |
B | AA_kinase | e1b7bB1 | A: a/b three-layered sandwiches | X: Carbamate kinase-like (From Topology) | H: Carbamate kinase-like (From Topology) | T: Carbamate kinase-like | F: AA_kinase | ECOD (1.6) |
C | AA_kinase | e1b7bC1 | A: a/b three-layered sandwiches | X: Carbamate kinase-like (From Topology) | H: Carbamate kinase-like (From Topology) | T: Carbamate kinase-like | F: AA_kinase | ECOD (1.6) |
D | AA_kinase | e1b7bD1 | A: a/b three-layered sandwiches | X: Carbamate kinase-like (From Topology) | H: Carbamate kinase-like (From Topology) | T: Carbamate kinase-like | F: AA_kinase | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.1160.10 | Alpha Beta | 3-Layer(aba) Sandwich | Carbamate kinase | Acetylglutamate kinase-like | CATH (4.3.0) |
B | 3.40.1160.10 | Alpha Beta | 3-Layer(aba) Sandwich | Carbamate kinase | Acetylglutamate kinase-like | CATH (4.3.0) |
C | 3.40.1160.10 | Alpha Beta | 3-Layer(aba) Sandwich | Carbamate kinase | Acetylglutamate kinase-like | CATH (4.3.0) |
D | 3.40.1160.10 | Alpha Beta | 3-Layer(aba) Sandwich | Carbamate kinase | Acetylglutamate kinase-like | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Structure Motif Annotation: Mechanism and Catalytic Site Atlas M-CSA Database Homepage
Chains | Enzyme Name | Description | Catalytic Residues |
---|---|---|---|
carbamate kinase M-CSA #669 | Carbamoyl phosphate (CP) can be synthesised from mixtures of ATP, bicarbonate and ammonia by two types of enzymes: carbamoyl phosphate synthases (CPS) and carbamate kinases (CK). CPS uses a three step mechanism and consumes two molecule of ATP per molecule of CP synthesised; this reaction is essentially irreversible and is the first committed step in the biosynthesis of pyrimidines, arginine and urea. By contrast, carbamate kinases (CK) make CP reversibly in a one-step reaction using one molecule of ATP per CP molecule synthesised. The actual substrate for these enzymes is carbamate which is in equilibrium with bicarbonate and ammonia. The in vivo role of CK from many organisms in which it has been studied (such as Enterococcus faecalis) seems to be to generate ATP from ADP using carbamoyl phosphate derived from the catabolism of arginine. However in some species, such as the hypothermophilic archaea Pyrococcus furiosus and Pyrococcus abyssi the enzyme appears to have an anabolic role. The enzyme from these species has in fact been called a \"carbamate kinase-like carbamoyl phosphate synthetase\", although studies have shown that is structurally and enzymologically a carbamate kinase. | Defined by 5 residues: GLY:A-11ASN:A-12LYS:A-128LYS:A-209LYS:A-271 | EC: 2.7.2.2 (PDB Primary Data) |