1BMV
PROTEIN-RNA INTERACTIONS IN AN ICOSAHEDRAL VIRUS AT 3.0 ANGSTROMS RESOLUTION
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth 1] | d1bmv11 | All beta proteins | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | Comoviridae-like VP | Comovirus coat proteins (VP37 and VP23) | (Bean pod mottle virus ) [TaxId: 12260 ], | SCOPe (2.08) |
C [auth 2] | d1bmv21 | All beta proteins | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | Comoviridae-like VP | Comovirus coat proteins (VP37 and VP23) | (Bean pod mottle virus ) [TaxId: 12260 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C [auth 2] | SCOP2B Superfamily | Positive stranded ssRNA viruses-like | 8038733 | 3000918 | SCOP2B (2022-06-29) |
C [auth 2] | SCOP2B Superfamily | Positive stranded ssRNA viruses-like | 8038731 | 3000918 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth 1] | Como_SCP | e1bmv11 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Como_SCP | ECOD (1.6) |
C [auth 2] | Como_LCP_C | e1bmv22 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Como_LCP_C | ECOD (1.6) |
C [auth 2] | Como_LCP_N | e1bmv21 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Como_LCP_N | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B [auth 1] | 2.60.120.20 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
C [auth 2] | 2.60.120.20 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
B [auth 1] | PF02248 | Small coat protein (Como_SCP) | Small coat protein | This family contains the small coat protein (SCP) [1] of the comoviridae viral family. | Domain |
C [auth 2] | PF02247 | Large coat protein (Como_LCP) | Large coat protein | This family contains the large coat protein (LCP) [1] of the comoviridae viral family. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
B [auth 1] | IPR003181 | Large coat protein | Family |
B [auth 1] | IPR029053 | Viral coat protein subunit | Homologous Superfamily |
B [auth 1] | IPR003182 | RNA2 polyprotein | Family |
C [auth 2] | IPR003181 | Large coat protein | Family |
C [auth 2] | IPR029053 | Viral coat protein subunit | Homologous Superfamily |
C [auth 2] | IPR003182 | RNA2 polyprotein | Family |