1H64 | pdb_00001h64

CRYSTAL STRUCTURE OF THE SM-RELATED PROTEIN OF P. ABYSSI: THE BIOLOGICAL UNIT IS A HEPTAMER


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
A [auth 1]d1h641_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein (Pyrococcus abyssi ) [TaxId: 29292 ], SCOPe (2.08)
AA [auth Y]d1h64y_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein (Pyrococcus abyssi ) [TaxId: 29292 ], SCOPe (2.08)
J [auth H]d1h64h_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein (Pyrococcus abyssi ) [TaxId: 29292 ], SCOPe (2.08)
K [auth I]d1h64i_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein (Pyrococcus abyssi ) [TaxId: 29292 ], SCOPe (2.08)
O [auth M]d1h64m_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein (Pyrococcus abyssi ) [TaxId: 29292 ], SCOPe (2.08)
P [auth N]d1h64n_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein (Pyrococcus abyssi ) [TaxId: 29292 ], SCOPe (2.08)
V [auth T]d1h64t_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein (Pyrococcus abyssi ) [TaxId: 29292 ], SCOPe (2.08)
Z [auth X]d1h64x_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein (Pyrococcus abyssi ) [TaxId: 29292 ], SCOPe (2.08)
Y [auth W]d1h64w_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein (Pyrococcus abyssi ) [TaxId: 29292 ], SCOPe (2.08)
X [auth V]d1h64v_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein (Pyrococcus abyssi ) [TaxId: 29292 ], SCOPe (2.08)
W [auth U]d1h64u_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein (Pyrococcus abyssi ) [TaxId: 29292 ], SCOPe (2.08)
U [auth S]d1h64s_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein (Pyrococcus abyssi ) [TaxId: 29292 ], SCOPe (2.08)
T [auth R]d1h64r_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein (Pyrococcus abyssi ) [TaxId: 29292 ], SCOPe (2.08)
S [auth Q]d1h64q_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein (Pyrococcus abyssi ) [TaxId: 29292 ], SCOPe (2.08)
R [auth P]d1h64p_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein (Pyrococcus abyssi ) [TaxId: 29292 ], SCOPe (2.08)
Q [auth O]d1h64o_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein (Pyrococcus abyssi ) [TaxId: 29292 ], SCOPe (2.08)
N [auth L]d1h64l_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein (Pyrococcus abyssi ) [TaxId: 29292 ], SCOPe (2.08)
M [auth K]d1h64k_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein (Pyrococcus abyssi ) [TaxId: 29292 ], SCOPe (2.08)
L [auth J]d1h64j_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein (Pyrococcus abyssi ) [TaxId: 29292 ], SCOPe (2.08)
I [auth G]d1h64g_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein (Pyrococcus abyssi ) [TaxId: 29292 ], SCOPe (2.08)
H [auth F]d1h64f_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein (Pyrococcus abyssi ) [TaxId: 29292 ], SCOPe (2.08)
G [auth E]d1h64e_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein (Pyrococcus abyssi ) [TaxId: 29292 ], SCOPe (2.08)
F [auth D]d1h64d_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein (Pyrococcus abyssi ) [TaxId: 29292 ], SCOPe (2.08)
E [auth C]d1h64c_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein (Pyrococcus abyssi ) [TaxId: 29292 ], SCOPe (2.08)
D [auth B]d1h64b_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein (Pyrococcus abyssi ) [TaxId: 29292 ], SCOPe (2.08)
C [auth A]d1h64a_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein (Pyrococcus abyssi ) [TaxId: 29292 ], SCOPe (2.08)
BA [auth Z]d1h64z_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein (Pyrococcus abyssi ) [TaxId: 29292 ], SCOPe (2.08)
B [auth 2]d1h642_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein (Pyrococcus abyssi ) [TaxId: 29292 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth 1]SCOP2B SuperfamilySm-like ribonucleoproteins 8042422 3000419 SCOP2B (2022-06-29)
AA [auth Y]SCOP2B SuperfamilySm-like ribonucleoproteins 8042422 3000419 SCOP2B (2022-06-29)
J [auth H]SCOP2B SuperfamilySm-like ribonucleoproteins 8042422 3000419 SCOP2B (2022-06-29)
K [auth I]SCOP2B SuperfamilySm-like ribonucleoproteins 8042422 3000419 SCOP2B (2022-06-29)
O [auth M]SCOP2B SuperfamilySm-like ribonucleoproteins 8042422 3000419 SCOP2B (2022-06-29)
P [auth N]SCOP2B SuperfamilySm-like ribonucleoproteins 8042422 3000419 SCOP2B (2022-06-29)
V [auth T]SCOP2B SuperfamilySm-like ribonucleoproteins 8042422 3000419 SCOP2B (2022-06-29)
Z [auth X]SCOP2B SuperfamilySm-like ribonucleoproteins 8042422 3000419 SCOP2B (2022-06-29)
Y [auth W]SCOP2B SuperfamilySm-like ribonucleoproteins 8042422 3000419 SCOP2B (2022-06-29)
X [auth V]SCOP2B SuperfamilySm-like ribonucleoproteins 8042422 3000419 SCOP2B (2022-06-29)
W [auth U]SCOP2B SuperfamilySm-like ribonucleoproteins 8042422 3000419 SCOP2B (2022-06-29)
U [auth S]SCOP2B SuperfamilySm-like ribonucleoproteins 8042422 3000419 SCOP2B (2022-06-29)
T [auth R]SCOP2B SuperfamilySm-like ribonucleoproteins 8042422 3000419 SCOP2B (2022-06-29)
S [auth Q]SCOP2B SuperfamilySm-like ribonucleoproteins 8042422 3000419 SCOP2B (2022-06-29)
R [auth P]SCOP2B SuperfamilySm-like ribonucleoproteins 8042422 3000419 SCOP2B (2022-06-29)
Q [auth O]SCOP2B SuperfamilySm-like ribonucleoproteins 8042422 3000419 SCOP2B (2022-06-29)
N [auth L]SCOP2B SuperfamilySm-like ribonucleoproteins 8042422 3000419 SCOP2B (2022-06-29)
M [auth K]SCOP2B SuperfamilySm-like ribonucleoproteins 8042422 3000419 SCOP2B (2022-06-29)
L [auth J]SCOP2B SuperfamilySm-like ribonucleoproteins 8042422 3000419 SCOP2B (2022-06-29)
I [auth G]SCOP2B SuperfamilySm-like ribonucleoproteins 8042422 3000419 SCOP2B (2022-06-29)
H [auth F]SCOP2B SuperfamilySm-like ribonucleoproteins 8042422 3000419 SCOP2B (2022-06-29)
G [auth E]SCOP2B SuperfamilySm-like ribonucleoproteins 8042422 3000419 SCOP2B (2022-06-29)
F [auth D]SCOP2B SuperfamilySm-like ribonucleoproteins 8042422 3000419 SCOP2B (2022-06-29)
E [auth C]SCOP2B SuperfamilySm-like ribonucleoproteins 8042422 3000419 SCOP2B (2022-06-29)
D [auth B]SCOP2B SuperfamilySm-like ribonucleoproteins 8042422 3000419 SCOP2B (2022-06-29)
C [auth A]SCOP2 FamilySm motif of small nuclear ribonucleoproteins, SNRNP 8030043 4001809 SCOP2 (2022-06-29)
C [auth A]SCOP2 SuperfamilySm-like ribonucleoproteins 8042422 3000419 SCOP2 (2022-06-29)
BA [auth Z]SCOP2B SuperfamilySm-like ribonucleoproteins 8042422 3000419 SCOP2B (2022-06-29)
B [auth 2]SCOP2B SuperfamilySm-like ribonucleoproteins 8042422 3000419 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth 1]LSMe1h6411 A: beta barrelsX: SH3H: SH3T: SH3F: LSMECOD (1.6)
AA [auth Y]LSMe1h64Y1 A: beta barrelsX: SH3H: SH3T: SH3F: LSMECOD (1.6)
J [auth H]LSMe1h64H1 A: beta barrelsX: SH3H: SH3T: SH3F: LSMECOD (1.6)
K [auth I]LSMe1h64I1 A: beta barrelsX: SH3H: SH3T: SH3F: LSMECOD (1.6)
O [auth M]LSMe1h64M1 A: beta barrelsX: SH3H: SH3T: SH3F: LSMECOD (1.6)
P [auth N]LSMe1h64N1 A: beta barrelsX: SH3H: SH3T: SH3F: LSMECOD (1.6)
V [auth T]LSMe1h64T1 A: beta barrelsX: SH3H: SH3T: SH3F: LSMECOD (1.6)
Z [auth X]LSMe1h64X1 A: beta barrelsX: SH3H: SH3T: SH3F: LSMECOD (1.6)
Y [auth W]LSMe1h64W1 A: beta barrelsX: SH3H: SH3T: SH3F: LSMECOD (1.6)
X [auth V]LSMe1h64V1 A: beta barrelsX: SH3H: SH3T: SH3F: LSMECOD (1.6)
W [auth U]LSMe1h64U1 A: beta barrelsX: SH3H: SH3T: SH3F: LSMECOD (1.6)
U [auth S]LSMe1h64S1 A: beta barrelsX: SH3H: SH3T: SH3F: LSMECOD (1.6)
T [auth R]LSMe1h64R1 A: beta barrelsX: SH3H: SH3T: SH3F: LSMECOD (1.6)
S [auth Q]LSMe1h64Q1 A: beta barrelsX: SH3H: SH3T: SH3F: LSMECOD (1.6)
R [auth P]LSMe1h64P1 A: beta barrelsX: SH3H: SH3T: SH3F: LSMECOD (1.6)
Q [auth O]LSMe1h64O1 A: beta barrelsX: SH3H: SH3T: SH3F: LSMECOD (1.6)
N [auth L]LSMe1h64L1 A: beta barrelsX: SH3H: SH3T: SH3F: LSMECOD (1.6)
M [auth K]LSMe1h64K1 A: beta barrelsX: SH3H: SH3T: SH3F: LSMECOD (1.6)
L [auth J]LSMe1h64J1 A: beta barrelsX: SH3H: SH3T: SH3F: LSMECOD (1.6)
I [auth G]LSMe1h64G1 A: beta barrelsX: SH3H: SH3T: SH3F: LSMECOD (1.6)
H [auth F]LSMe1h64F1 A: beta barrelsX: SH3H: SH3T: SH3F: LSMECOD (1.6)
G [auth E]LSMe1h64E1 A: beta barrelsX: SH3H: SH3T: SH3F: LSMECOD (1.6)
F [auth D]LSMe1h64D1 A: beta barrelsX: SH3H: SH3T: SH3F: LSMECOD (1.6)
E [auth C]LSMe1h64C1 A: beta barrelsX: SH3H: SH3T: SH3F: LSMECOD (1.6)
D [auth B]LSMe1h64B1 A: beta barrelsX: SH3H: SH3T: SH3F: LSMECOD (1.6)
C [auth A]LSMe1h64A1 A: beta barrelsX: SH3H: SH3T: SH3F: LSMECOD (1.6)
BA [auth Z]LSMe1h64Z1 A: beta barrelsX: SH3H: SH3T: SH3F: LSMECOD (1.6)
B [auth 2]LSMe1h6421 A: beta barrelsX: SH3H: SH3T: SH3F: LSMECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A [auth 1]2.30.30.100 Mainly Beta Roll SH3 type barrels. CATH (4.2.0)
AA [auth Y]2.30.30.100 Mainly Beta Roll SH3 type barrels. CATH (4.2.0)
J [auth H]2.30.30.100 Mainly Beta Roll SH3 type barrels. CATH (4.2.0)
K [auth I]2.30.30.100 Mainly Beta Roll SH3 type barrels. CATH (4.2.0)
O [auth M]2.30.30.100 Mainly Beta Roll SH3 type barrels. CATH (4.2.0)
P [auth N]2.30.30.100 Mainly Beta Roll SH3 type barrels. CATH (4.2.0)
V [auth T]2.30.30.100 Mainly Beta Roll SH3 type barrels. CATH (4.2.0)
Z [auth X]2.30.30.100 Mainly Beta Roll SH3 type barrels. CATH (4.2.0)
Y [auth W]2.30.30.100 Mainly Beta Roll SH3 type barrels. CATH (4.2.0)
X [auth V]2.30.30.100 Mainly Beta Roll SH3 type barrels. CATH (4.2.0)
W [auth U]2.30.30.100 Mainly Beta Roll SH3 type barrels. CATH (4.2.0)
U [auth S]2.30.30.100 Mainly Beta Roll SH3 type barrels. CATH (4.2.0)
T [auth R]2.30.30.100 Mainly Beta Roll SH3 type barrels. CATH (4.2.0)
S [auth Q]2.30.30.100 Mainly Beta Roll SH3 type barrels. CATH (4.2.0)
R [auth P]2.30.30.100 Mainly Beta Roll SH3 type barrels. CATH (4.2.0)
Q [auth O]2.30.30.100 Mainly Beta Roll SH3 type barrels. CATH (4.2.0)
N [auth L]2.30.30.100 Mainly Beta Roll SH3 type barrels. CATH (4.2.0)
M [auth K]2.30.30.100 Mainly Beta Roll SH3 type barrels. CATH (4.2.0)
L [auth J]2.30.30.100 Mainly Beta Roll SH3 type barrels. CATH (4.2.0)
I [auth G]2.30.30.100 Mainly Beta Roll SH3 type barrels. CATH (4.2.0)
H [auth F]2.30.30.100 Mainly Beta Roll SH3 type barrels. CATH (4.2.0)
G [auth E]2.30.30.100 Mainly Beta Roll SH3 type barrels. CATH (4.2.0)
F [auth D]2.30.30.100 Mainly Beta Roll SH3 type barrels. CATH (4.2.0)
E [auth C]2.30.30.100 Mainly Beta Roll SH3 type barrels. CATH (4.2.0)
D [auth B]2.30.30.100 Mainly Beta Roll SH3 type barrels. CATH (4.2.0)
C [auth A]2.30.30.100 Mainly Beta Roll SH3 type barrels. CATH (4.2.0)
BA [auth Z]2.30.30.100 Mainly Beta Roll SH3 type barrels. CATH (4.2.0)
B [auth 2]2.30.30.100 Mainly Beta Roll SH3 type barrels. CATH (4.2.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
SNRNP SM-LIKE PROTEIN

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR001163Sm domain, eukaryotic/archaea-typeDomain
IPR016487Sm-like protein Lsm6/SmFFamily
IPR010920LSM domain superfamilyHomologous Superfamily
IPR047575Sm domainDomain
IPR022901snRNP Sm-like, putative, archaeaFamily