Annotations: 1I6H


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
C [auth A]d1i6ha_ Multi-domain proteins (alpha and beta) beta and beta-prime subunits of DNA dependent RNA-polymerase beta and beta-prime subunits of DNA dependent RNA-polymerase RNA-polymerase beta-prime RBP1 (Saccharomyces cerevisiae ) [TaxId: 4932 ], SCOPe (2.08)
D [auth B]d1i6hb_ Multi-domain proteins (alpha and beta) beta and beta-prime subunits of DNA dependent RNA-polymerase beta and beta-prime subunits of DNA dependent RNA-polymerase RNA-polymerase beta RBP2 (Saccharomyces cerevisiae ) [TaxId: 4932 ], SCOPe (2.08)
E [auth C]d1i6hc1 Alpha and beta proteins (a+b) DCoH-like RBP11-like subunits of RNA polymerase RNA polymerase alpha subunit dimerisation domain RPB3 (Saccharomyces cerevisiae ) [TaxId: 4932 ], SCOPe (2.08)
E [auth C]d1i6hc2 Alpha and beta proteins (a+b) Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit RPB3 (Saccharomyces cerevisiae ) [TaxId: 4932 ], SCOPe (2.08)
F [auth E]d1i6he1 Alpha and beta proteins (a/b) Restriction endonuclease-like Eukaryotic RPB5 N-terminal domain Eukaryotic RPB5 N-terminal domain Eukaryotic RPB5 N-terminal domain (Saccharomyces cerevisiae ) [TaxId: 4932 ], SCOPe (2.08)
F [auth E]d1i6he2 Alpha and beta proteins (a+b) RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit RPB5 Eukaryotic RPB5 C-terminal domain (Saccharomyces cerevisiae ) [TaxId: 4932 ], SCOPe (2.08)
G [auth F]d1i6hf_ All alpha proteins RPB6/omega subunit-like RPB6/omega subunit-like RPB6 RPB6 (Saccharomyces cerevisiae ) [TaxId: 4932 ], SCOPe (2.08)
Hd1i6hh_ All beta proteins OB-fold Nucleic acid-binding proteins RNA polymerase subunit RBP8 RNA polymerase subunit RBP8 (Saccharomyces cerevisiae ) [TaxId: 4932 ], SCOPe (2.08)
Id1i6hi1 Small proteins Rubredoxin-like Zinc beta-ribbon Transcriptional factor domain RBP9 subunit of RNA polymerase II (Saccharomyces cerevisiae ) [TaxId: 4932 ], SCOPe (2.08)
Jd1i6hj_ All alpha proteins DNA/RNA-binding 3-helical bundle RNA polymerase subunit RPB10 RNA polymerase subunit RPB10 RNA polymerase subunit RPB10 (Saccharomyces cerevisiae ) [TaxId: 4932 ], SCOPe (2.08)
Kd1i6hk_ Alpha and beta proteins (a+b) DCoH-like RBP11-like subunits of RNA polymerase RBP11/RpoL RPB11 (Saccharomyces cerevisiae ) [TaxId: 4932 ], SCOPe (2.08)
Ld1i6hl_ Small proteins Rubredoxin-like RNA polymerase subunits RBP12 subunit of RNA polymerase II RBP12 subunit of RNA polymerase II (Saccharomyces cerevisiae ) [TaxId: 4932 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
C [auth A]SCOP2B SuperfamilyTwo-barrel nucleic acid polymerases 8042682 3001330 SCOP2B (2022-06-29)
D [auth B]SCOP2B SuperfamilyTwo-barrel nucleic acid polymerases 8042684 3001330 SCOP2B (2022-06-29)
E [auth C]SCOP2B SuperfamilyRBP11-like subunits of RNA polymerase 8042685 3001655 SCOP2B (2022-06-29)
E [auth C]SCOP2B SuperfamilyInsert subdomain of RNA polymerase alpha subunit 8042687 3001500 SCOP2B (2022-06-29)
F [auth E]SCOP2B SuperfamilyRPB5-like RNA polymerase subunit 8035939 3001722 SCOP2B (2022-06-29)
F [auth E]SCOP2B SuperfamilyEukaryotic RPB5 N-terminal domain 8044454 3000444 SCOP2B (2022-06-29)
G [auth F]SCOP2B SuperfamilyRPB6/omega subunit-like 8042688 3000189 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyRBP8/CHS5 N-terminal domain-like 8041967 3002702 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyRBP8/CHS5 N-terminal domain-like 8093392 3002702 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyZinc beta-ribbon 8042690 3001238 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyZinc beta-ribbon 8042689 3001238 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyRNA polymerase subunit RPB10 8042692 3001213 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyRBP11-like subunits of RNA polymerase 8042694 3001655 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyRNA polymerase subunits 8042695 3001823 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
C [auth A]RNA_pol_Rpb1_2e1i6hA10 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: double psiF: RNA_pol_Rpb1_2ECOD (1.6)
C [auth A]RNA_pol_Rpb1_2_1e1i6hA3 A: a+b two layersX: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase (From Topology)H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase (From Topology)T: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymeraseF: RNA_pol_Rpb1_2_1ECOD (1.6)
C [auth A]RNA_pol_Rpb1_7e1i6hA13 A: a+b two layersX: permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit (From Topology)H: permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit (From Topology)T: permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunitF: RNA_pol_Rpb1_7ECOD (1.6)
C [auth A]RNA_pol_Rpb1_7_1e1i6hA9 A: a+b two layersX: ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit (From Topology)H: ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit (From Topology)T: ferredoxin-like domain in yeast RNA-polymerase beta-prime subunitF: RNA_pol_Rpb1_7_1ECOD (1.6)
C [auth A]RNA_pol_Rpb1_1e1i6hA11 A: a+b complex topologyX: N-terminal domain in RNA-polymerase beta-prime subunit (From Topology)H: N-terminal domain in RNA-polymerase beta-prime subunit (From Topology)T: N-terminal domain in RNA-polymerase beta-prime subunitF: RNA_pol_Rpb1_1ECOD (1.6)
C [auth A]RNA_pol_Rpb1_5_3rde1i6hA8 A: a+b complex topologyX: central helical domain in RNA-polymerase beta-prime subunit (From Topology)H: central helical domain in RNA-polymerase beta-prime subunit (From Topology)T: central helical domain in RNA-polymerase beta-prime subunitF: RNA_pol_Rpb1_5_3rdECOD (1.6)
C [auth A]RNA_pol_Rpb1_6e1i6hA7 A: a+b complex topologyX: helical domain in yeast RNA-polymerasesH: third helical domain in yeast RNA-polymerase II beta-prime subunit (From Topology)T: third helical domain in yeast RNA-polymerase II beta-prime subunitF: RNA_pol_Rpb1_6ECOD (1.6)
C [auth A]RNA_pol_Rpb1_4e1i6hA12 A: a+b complex topologyX: second helical domain in RNA-polymerase beta-prime subunit (From Topology)H: second helical domain in RNA-polymerase beta-prime subunit (From Topology)T: second helical domain in RNA-polymerase beta-prime subunitF: RNA_pol_Rpb1_4ECOD (1.6)
C [auth A]RNA_pol_Rpb1_3e1i6hA14 A: a+b complex topologyX: first helical domain in RNA-polymerase beta-prime subunit (From Topology)H: first helical domain in RNA-polymerase beta-prime subunit (From Topology)T: first helical domain in RNA-polymerase beta-prime subunitF: RNA_pol_Rpb1_3ECOD (1.6)
D [auth B]RNA_pol_Rpb2_6_3rd_2e1i6hB2 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: double psiF: RNA_pol_Rpb2_6_3rd_2ECOD (1.6)
D [auth B]RNA_pol_Rpb2_6_2nd_1e1i6hB1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Single hybrid motifF: RNA_pol_Rpb2_6_2nd_1ECOD (1.6)
D [auth B]RNA_pol_Rpb2_3e1i6hB5 A: a+b complex topologyX: N-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology)H: N-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology)T: N-terminal domain in beta subunit of DNA dependent RNA-polymeraseF: RNA_pol_Rpb2_3ECOD (1.6)
D [auth B]RNA_pol_Rpb2_1e1i6hB4 A: a+b complex topologyX: insertion domain in beta subunit of DNA dependent RNA-polymerase (From Topology)H: insertion domain in beta subunit of DNA dependent RNA-polymerase (From Topology)T: insertion domain in beta subunit of DNA dependent RNA-polymeraseF: RNA_pol_Rpb2_1ECOD (1.6)
D [auth B]RNA_pol_Rpb2_45_1e1i6hB3 A: a+b complex topologyX: barrel domain in beta subunit of DNA dependent RNA-polymerase (From Topology)H: barrel domain in beta subunit of DNA dependent RNA-polymerase (From Topology)T: barrel domain in beta subunit of DNA dependent RNA-polymeraseF: RNA_pol_Rpb2_45_1ECOD (1.6)
D [auth B]RNA_pol_Rpb2_7e1i6hB7 A: a+b complex topologyX: C-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology)H: C-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology)T: C-terminal domain in beta subunit of DNA dependent RNA-polymeraseF: RNA_pol_Rpb2_7ECOD (1.6)
D [auth B]RNA_pol_Rpb2_4e1i6hB6 A: a+b complex topologyX: inserted a+b domain in yeast RNA polymerase beta subunit (From Topology)H: inserted a+b domain in yeast RNA polymerase beta subunit (From Topology)T: inserted a+b domain in yeast RNA polymerase beta subunitF: RNA_pol_Rpb2_4ECOD (1.6)
E [auth C]RNA_pol_L_1e1i6hC1 A: a+b two layersX: DCoH-likeH: RBP11-like subunits of RNA polymerase (From Topology)T: RBP11-like subunits of RNA polymeraseF: RNA_pol_L_1ECOD (1.6)
E [auth C]RNA_pol_A_bac_1e1i6hC2 A: a+b complex topologyX: Ribosomal protein TL5/L25 C-terminal domain-likeH: Insert subdomain of RNA polymerase alpha subunit (From Topology)T: Insert subdomain of RNA polymerase alpha subunitF: RNA_pol_A_bac_1ECOD (1.6)
F [auth E]RNA_pol_Rpb5_Ce1i6hE1 A: a+b two layersX: RPB5-like RNA polymerase subunit (From Topology)H: RPB5-like RNA polymerase subunit (From Topology)T: RPB5-like RNA polymerase subunitF: RNA_pol_Rpb5_CECOD (1.6)
F [auth E]RNA_pol_Rpb5_Ne1i6hE2 A: a/b three-layered sandwichesX: Restriction endonuclease-likeH: Eukaryotic RPB5 N-terminal domain (From Topology)T: Eukaryotic RPB5 N-terminal domainF: RNA_pol_Rpb5_NECOD (1.6)
G [auth F]RNA_pol_Rpb6_1e1i6hF1 A: alpha arraysX: RPB6/omega subunit-like (From Homology)H: RPB6/omega subunit-likeT: RPB6F: RNA_pol_Rpb6_1ECOD (1.6)
HRNA_pol_Rpb8e1i6hH1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: RNA_pol_Rpb8ECOD (1.6)
IRNA_POL_M_15KDe1i6hI1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: RNA_POL_M_15KDECOD (1.6)
ITFIIS_Ce1i6hI2 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: TFIIS_CECOD (1.6)
JRNA_pol_Ne1i6hJ1 A: alpha arraysX: HTHH: RPB10 (From Topology)T: RPB10F: RNA_pol_NECOD (1.6)
KRNA_pol_L_2e1i6hK1 A: a+b two layersX: DCoH-likeH: RBP11-like subunits of RNA polymerase (From Topology)T: RBP11-like subunits of RNA polymeraseF: RNA_pol_L_2ECOD (1.6)
LDNA_RNApol_7kDe1i6hL1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: DNA_RNApol_7kDECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
C [auth A]2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases CATH (4.3.0)
C [auth A]3.30.1490.180 Alpha Beta 2-Layer Sandwich Dna Ligase domain 1CATH (4.3.0)
C [auth A]1.10.274.100 Mainly Alpha Orthogonal Bundle Enzyme I Chain A, domain 2CATH (4.3.0)
C [auth A]1.10.132.30 Mainly Alpha Orthogonal Bundle Topoisomerase I Chain A, domain 4CATH (4.3.0)
C [auth A]3.30.1360.140 Alpha Beta 2-Layer Sandwich Gyrase A domain 2CATH (4.3.0)
D [auth B]3.90.1110.10 Alpha Beta Alpha-Beta Complex Dna-directed Rna Polymerase Ii 140kd Polypeptide Chain: BCATH (4.3.0)
D [auth B]3.90.1070.20 Alpha Beta Alpha-Beta Complex Hypothetical Protein Ta0175 Chain: A, domain 2CATH (4.3.0)
D [auth B]2.40.270.10 Mainly Beta Beta Barrel Dna-directed Rna Polymerase Ii 140kd Polypeptide Chain: BCATH (4.3.0)
D [auth B]2.40.50.150 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) RNA polymerase II, Rpb2 subunit, wall domainCATH (4.3.0)
D [auth B]3.90.1800.10 Alpha Beta Alpha-Beta Complex DCoH-like RNA polymerase alpha subunit dimerisation domainCATH (4.3.0)
E [auth C]2.170.120.12 Mainly Beta Beta Complex RNA Polymerase Alpha Subunit Chain A, domain 2CATH (4.3.0)
E [auth C]3.30.1360.10 Alpha Beta 2-Layer Sandwich Gyrase A domain 2CATH (4.3.0)
F [auth E]3.40.1340.10 Alpha Beta 3-Layer(aba) Sandwich Dna-directed Rna Polymerases I, Ii, And Iii 27 Kd Polypeptide Chain: ACATH (4.3.0)
F [auth E]3.90.940.20 Alpha Beta Alpha-Beta Complex Eukaryotic RPB6 RNA polymerase subunit RPB5-like RNA polymerase subunitCATH (4.3.0)
G [auth F]3.90.940.10 Alpha Beta Alpha-Beta Complex Eukaryotic RPB6 RNA polymerase subunit RNA polymerase subunit, RPB6/omegaCATH (4.3.0)
H2.40.50.140 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) Nucleic acid-binding proteinsCATH (4.3.0)
I2.20.25.10 Mainly Beta Single Sheet N-terminal domain of TfIIb CATH (4.3.0)
J1.10.10.60 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A Homeodomain-likeCATH (4.3.0)
K3.30.1360.10 Alpha Beta 2-Layer Sandwich Gyrase A domain 2CATH (4.3.0)
L2.20.28.30 Mainly Beta Single Sheet Rubrerythrin, domain 2 RNA polymerase ii, chain LCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
C [auth A]PF00623RNA polymerase Rpb1, domain 2 (RNA_pol_Rpb1_2)RNA polymerase Rpb1, domain 2RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 2, contains the active site ...Domain
C [auth A]PF04990RNA polymerase Rpb1, domain 7 (RNA_pol_Rpb1_7)RNA polymerase Rpb1, domain 7RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 7, represents a mobile modu ...Domain
C [auth A]PF05000RNA polymerase Rpb1, domain 4 (RNA_pol_Rpb1_4)RNA polymerase Rpb1, domain 4RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 4, represents the funnel do ...Domain
C [auth A]PF04983RNA polymerase Rpb1, domain 3 (RNA_pol_Rpb1_3)RNA polymerase Rpb1, domain 3RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 3, represents the pore doma ...Domain
C [auth A]PF04992RNA polymerase Rpb1, domain 6 (RNA_pol_Rpb1_6)RNA polymerase Rpb1, domain 6RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 6, represents a mobile modu ...Domain
C [auth A]PF04998RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5)RNA polymerase Rpb1, domain 5RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 5, represents the discontin ...Domain
C [auth A]PF04997RNA polymerase Rpb1, domain 1 (RNA_pol_Rpb1_1)RNA polymerase Rpb1, domain 1RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 1, represents the clamp dom ...Domain
D [auth B]PF04561RNA polymerase Rpb2, domain 2 (RNA_pol_Rpb2_2)RNA polymerase Rpb2, domain 2RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Rpb2 is the second largest subunit of the RNA po ...Domain
D [auth B]PF04560RNA polymerase Rpb2, domain 7 (RNA_pol_Rpb2_7)RNA polymerase Rpb2, domain 7RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Rpb2 is the second largest subunit of the RNA p ...Domain
D [auth B]PF04565RNA polymerase Rpb2, domain 3 (RNA_pol_Rpb2_3)RNA polymerase Rpb2, domain 3RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 3, s also known as the fork domain and is ...Domain
D [auth B]PF04566RNA polymerase Rpb2, domain 4 (RNA_pol_Rpb2_4)RNA polymerase Rpb2, domain 4RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 4, is also known as the external 2 domain ...Domain
D [auth B]PF04563RNA polymerase beta subunit (RNA_pol_Rpb2_1)RNA polymerase beta subunit- Family
D [auth B]PF00562RNA polymerase Rpb2, domain 6 (RNA_pol_Rpb2_6)RNA polymerase Rpb2, domain 6RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain represents the hybrid binding domain ...Domain
D [auth B]PF04567RNA polymerase Rpb2, domain 5 (RNA_pol_Rpb2_5)RNA polymerase Rpb2, domain 5RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 5, is also known as the external 2 domain ...Domain
E [auth C]PF01193RNA polymerase Rpb3/Rpb11 dimerisation domain (RNA_pol_L)RNA polymerase Rpb3/Rpb11 dimerisation domainThe two eukaryotic subunits Rpb3 and Rpb11 dimerise to from a platform onto which the other subunits of the RNA polymerase assemble (D/L in archaea). The prokaryotic equivalent of the Rpb3/Rpb11 platform is the alpha-alpha dimer. The dimerisation do ...Domain
E [auth C]PF01000RNA polymerase Rpb3/RpoA insert domain (RNA_pol_A_bac)RNA polymerase Rpb3/RpoA insert domainMembers of this family include: alpha subunit from eubacteria alpha subunits from chloroplasts Rpb3 subunits from eukaryotes RpoD subunits from archaeal Domain
F [auth E]PF01191RNA polymerase Rpb5, C-terminal domain (RNA_pol_Rpb5_C)RNA polymerase Rpb5, C-terminal domainThe assembly domain of Rpb5 [1]. The archaeal equivalent to this domain is subunit H. Subunit H lacks the N-terminal domain. Domain
F [auth E]PF03871RNA polymerase Rpb5, N-terminal domain (RNA_pol_Rpb5_N)RNA polymerase Rpb5, N-terminal domainRpb5 has a bipartite structure which includes a eukaryote-specific N-terminal domain and a C-terminal domain resembling the archaeal RNAP subunit H [1,2]. The N-terminal domain is involved in DNA binding and is part of the jaw module in the RNA p ...Domain
G [auth F]PF01192RNA polymerase Rpb6 (RNA_pol_Rpb6)RNA polymerase Rpb6- Family
PF03870RNA polymerase Rpb8 (RNA_pol_Rpb8)RNA polymerase Rpb8- Family
PF02150RNA polymerases M/15 Kd subunit (Zn_ribbon_RPB9)RNA polymerases M/15 Kd subunitDomain
PF01096Transcription factor S-II (TFIIS) (Zn_ribbon_TFIIS)Transcription factor S-II (TFIIS)Domain
PF01194RNA polymerases N / 8 kDa subunit (RNA_pol_N)RNA polymerases N / 8 kDa subunitDomain
PF13656RNA polymerase Rpb3/Rpb11 dimerisation domain (RNA_pol_L_2)RNA polymerase Rpb3/Rpb11 dimerisation domainThe two eukaryotic subunits Rpb3 and Rpb11 dimerise to from a platform onto which the other subunits of the RNA polymerase assemble (D/L in archaea). The prokaryotic equivalent of the Rpb3/Rpb11 platform is the alpha-alpha dimer. The dimerisation do ...Domain
PF03604DNA directed RNA polymerase, 7 kDa subunit (Zn_ribbon_RPAB4)DNA directed RNA polymerase, 7 kDa subunitDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
B [auth R]5'-R(P*GP*AP*CP*CP*AP*GP*GP*CP*A)-3'---
C [auth A]DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT
D [auth B]DNA-DIRECTED RNA POLYMERASE II 140KD POLYPEPTIDE
E [auth C]DNA-DIRECTED RNA POLYMERASE II 45KD POLYPEPTIDE
F [auth E]DNA-DIRECTED RNA POLYMERASE II 27KD POLYPEPTIDE
G [auth F]DNA-DIRECTED RNA POLYMERASE II 23KD POLYPEPTIDE
DNA-DIRECTED RNA POLYMERASE II 14.5KD POLYPEPTIDE
DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE
DNA-DIRECTED RNA POLYMERASE II 8.3KD POLYPEPTIDE
DNA-DIRECTED RNA POLYMERASE II 13.6KD POLYPEPTIDE
A [auth D]5'-D(P*AP*AP*AP*TP*GP*CP*CP*TP*GP*GP*TP*CP*T)-3'---
DNA-DIRECTED RNA POLYMERASE II 7.7KD POLYPEPTIDE

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
C [auth A]IPR007081RNA polymerase Rpb1, domain 5Domain
C [auth A]IPR045867DNA-directed RNA polymerase, subunit beta-primeFamily
C [auth A]IPR007075RNA polymerase Rpb1, domain 6Domain
C [auth A]IPR000684RNA polymerase II, heptapeptide repeat, eukaryoticRepeat
C [auth A]IPR007083RNA polymerase Rpb1, domain 4Domain
C [auth A]IPR044893RNA polymerase Rpb1, clamp domain superfamilyHomologous Superfamily
C [auth A]IPR006592RNA polymerase, N-terminalDomain
C [auth A]IPR007066RNA polymerase Rpb1, domain 3Domain
C [auth A]IPR007073RNA polymerase Rpb1, domain 7Domain
C [auth A]IPR042102RNA polymerase Rpb1, domain 3 superfamilyHomologous Superfamily
C [auth A]IPR038593RNA polymerase Rpb1, domain 7 superfamilyHomologous Superfamily
C [auth A]IPR000722RNA polymerase, alpha subunitDomain
C [auth A]IPR038120RNA polymerase Rpb1, funnel domain superfamilyHomologous Superfamily
C [auth A]IPR007080RNA polymerase Rpb1, domain 1Domain
D [auth B]IPR007120DNA-directed RNA polymerase, subunit 2, hybrid-binding domainDomain
D [auth B]IPR007121RNA polymerase, beta subunit, conserved siteConserved Site
D [auth B]IPR007646RNA polymerase Rpb2, domain 4Domain
D [auth B]IPR007647RNA polymerase Rpb2, domain 5Domain
D [auth B]IPR014724RNA polymerase Rpb2, OB-foldHomologous Superfamily
D [auth B]IPR007642RNA polymerase Rpb2, domain 2Domain
D [auth B]IPR015712DNA-directed RNA polymerase, subunit 2Family
D [auth B]IPR037033DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamilyHomologous Superfamily
D [auth B]IPR037034RNA polymerase Rpb2, domain 2 superfamilyHomologous Superfamily
D [auth B]IPR007645RNA polymerase Rpb2, domain 3Domain
D [auth B]IPR007644RNA polymerase, beta subunit, protrusionDomain
D [auth B]IPR007641RNA polymerase Rpb2, domain 7Domain
E [auth C]IPR011262DNA-directed RNA polymerase, insert domainDomain
E [auth C]IPR011263DNA-directed RNA polymerase, RpoA/D/Rpb3-typeDomain
E [auth C]IPR050518Archaeal Rpo3/Eukaryotic RPB3 RNA Polymerase SubunitFamily
E [auth C]IPR022842DNA-directed RNA polymerase subunit Rpo3/Rpb3/RPAC1Family
E [auth C]IPR036643DNA-directed RNA polymerase, insert domain superfamilyHomologous Superfamily
E [auth C]IPR001514DNA-directed RNA polymerase, 30-40kDa subunit, conserved siteConserved Site
E [auth C]IPR036603RNA polymerase, RBP11-like subunitHomologous Superfamily
F [auth E]IPR036710RNA polymerase Rpb5, N-terminal domain superfamilyHomologous Superfamily
F [auth E]IPR014381DNA-directed RNA polymerase subunit Rpo5/Rpb5Family
F [auth E]IPR035913RPB5-like RNA polymerase subunit superfamilyHomologous Superfamily
F [auth E]IPR000783RNA polymerase, subunit H/Rpb5 C-terminalDomain
F [auth E]IPR020608RNA polymerase, subunit H/Rpb5, conserved siteConserved Site
F [auth E]IPR005571RNA polymerase, Rpb5, N-terminalDomain
G [auth F]IPR028363DNA-directed RNA polymerase, subunit RPB6Family
G [auth F]IPR006111Archaeal Rpo6/eukaryotic RPB6 RNA polymerase subunitFamily
G [auth F]IPR020708DNA-directed RNA polymerase, 14-18kDa subunit, conserved siteConserved Site
G [auth F]IPR006110RNA polymerase, subunit omega/Rpo6/RPB6Family
G [auth F]IPR036161RPB6/omega subunit-like superfamilyHomologous Superfamily
IPR005570DNA-directed RNA polymerases I, II, and III subunit RPABC3Family
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
IPR001529DNA-directed RNA polymerase II subunit RPB9-like, zinc ribbonDomain
IPR012164DNA-directed RNA polymerase subunit/transcription factor SFamily
IPR001222Zinc finger, TFIIS-typeDomain
IPR034012Pol II subunit B9, C-terminal zinc ribbonDomain
IPR019761DNA-directed RNA polymerase M, 15kDa subunit, conserved siteConserved Site
IPR020789RNA polymerases, subunit N, zinc binding siteBinding Site
IPR000268DNA-directed RNA polymerase subunit RPABC5/Rpb10Family
IPR023580RNA polymerase subunit RPB10Homologous Superfamily
IPR009025DNA-directed RNA polymerase, RBP11-like dimerisation domainDomain
IPR037685RNA polymerase RBP11Family
IPR022905DNA-directed RNA polymerase subunit Rpo11-likeFamily
IPR036603RNA polymerase, RBP11-like subunitHomologous Superfamily
IPR008193DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved siteConserved Site
IPR006591RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4Family
IPR029040RNA polymerase subunit RPABC4/transcription elongation factor Spt4Homologous Superfamily
IPR039747DNA-directed RNA polymerases I, II, and III subunit RPABC4Family