1IPA | pdb_00001ipa

CRYSTAL STRUCTURE OF RNA 2'-O RIBOSE METHYLTRANSFERASE

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1ipaa1	Alpha and beta proteins (a/b)	alpha/beta knot	alpha/beta knot	SpoU-like RNA 2'-O ribose methyltransferase	RrmA (RrmH), C-terminal domain	(Thermus thermophilus ) [TaxId: 274 ],	SCOPe (2.08)
A	d1ipaa2	Alpha and beta proteins (a+b)	Bacillus chorismate mutase-like	L30e-like	RNA 2'-O ribose methyltransferase substrate binding domain	RrmA (RrmH), N-terminal domain	(Thermus thermophilus ) [TaxId: 274 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	SpoU-like RNA 2'-O ribose methyltransferase	8027230	4002340	SCOP2 (2022-06-29)
A	SCOP2 Family	RNA 2'-O ribose methyltransferase substrate binding domain	8027231	4002711	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	alpha/beta knot	8039609	3001122	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	L30e-like	8039610	3001739	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	MRM3-like_sub_bind	e1ipaA1	A: a+b three layers	X: FwdE/GAPDH domain-like	H: L30e-like	T: L30e-like	F: MRM3-like_sub_bind	ECOD (v294.1)
A	SpoU_methylase	e1ipaA2	A: a/b three-layered sandwiches	X: alpha/beta knot	H: alpha/beta knot	T: alpha/beta knot	F: SpoU_methylase	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.1330.30	Alpha Beta	2-Layer Sandwich	60s Ribosomal Protein L30	Chain: A	CATH (4.3.0)
A	3.40.1280.10	Alpha Beta	3-Layer(aba) Sandwich	Alpha/beta knot	SPOUT methyltransferase, trefoil knot domain	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	RNA 2'-O-RIBOSE METHYLTRANSFERASE	RNA methyltransferase activity catalytic activity, acting on RNA transferase activity, transferring one-carbon groups catalytic activity, acting on a nucleic acid transferase activity methyltransferase activity catalytic activity RNA binding binding nucleic acid binding	methylation metabolic process cellular process RNA metabolic process primary metabolic process gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process biosynthetic process RNA processing methylation metabolic process cellular process RNA metabolic process primary metabolic process gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process biosynthetic process RNA processing macromolecule metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR001537	tRNA/rRNA methyltransferase, SpoU type	Domain
A	IPR029026	tRNA (guanine-N1-)-methyltransferase, N-terminal	Homologous Superfamily
A	IPR051259	Ribosomal RNA Methyltransferase	Family
A	IPR029028	Alpha/beta knot methyltransferases	Homologous Superfamily
A	IPR053888	MRM3-like, substrate binding domain	Domain
A	IPR029064	Ribosomal protein eL30-like superfamily	Homologous Superfamily
A	IPR013123	RNA 2-O ribose methyltransferase, substrate binding	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.