1IPJ | pdb_00001ipj

CRYSTAL STRUCTURES OF RECOMBINANT AND NATIVE SOYBEAN BETA-CONGLYCININ BETA HOMOTRIMERS COMPLEXES WITH N-ACETYL-D-GLUCOSAMINE

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1ipja1	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	Germin/Seed storage 7S protein	Seed storage 7S protein	(Glycine max ) [TaxId: 3847 ],	SCOPe (2.08)
B	d1ipjb1	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	Germin/Seed storage 7S protein	Seed storage 7S protein	(Glycine max ) [TaxId: 3847 ],	SCOPe (2.08)
C	d1ipjc1	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	Germin/Seed storage 7S protein	Seed storage 7S protein	(Glycine max ) [TaxId: 3847 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	RmlC-like cupins	8040869	3001825	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	RmlC-like cupins	8040870	3001825	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	RmlC-like cupins	8040869	3001825	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	RmlC-like cupins	8040870	3001825	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	RmlC-like cupins	8040870	3001825	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	RmlC-like cupins	8040869	3001825	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A		e1ipjA2	A: Cloacin translocation domain	X: Cloacin translocation domain	H: Cloacin translocation domain	T: Copper-bind	F:	ECOD (20:10:01)
A		e1ipjA3	A: jelly-roll	X: Double-stranded beta-helix	H: Double-stranded beta-helix	T: RhaA	F:	ECOD (20:10:01)
B		e1ipjB2	A: Cloacin translocation domain	X: Cloacin translocation domain	H: Cloacin translocation domain	T: Copper-bind	F:	ECOD (20:10:01)
B		e1ipjB3	A: jelly-roll	X: Double-stranded beta-helix	H: Double-stranded beta-helix	T: RhaA	F:	ECOD (20:10:01)
C		e1ipjC2	A: Cloacin translocation domain	X: Cloacin translocation domain	H: Cloacin translocation domain	T: Copper-bind	F:	ECOD (20:10:01)
C		e1ipjC3	A: jelly-roll	X: Double-stranded beta-helix	H: Double-stranded beta-helix	T: RhaA	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.3.0)
B	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.3.0)
C	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C	PF00190	Cupin (Cupin_1)	Cupin	This family represents the conserved barrel domain of the 'cupin' superfamily [1] ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major ...	This family represents the conserved barrel domain of the 'cupin' superfamily [1] ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C	BETA-CONGLYCININ, BETA CHAIN	nutrient reservoir activity	-	membrane-bounded organelle storage vacuole intracellular anatomical structure vacuole intracellular membrane-bounded organelle protein storage vacuole intracellular organelle cellular anatomical structure organelle plant-type vacuole cytoplasm aleurone grain intracellular vesicle cytoplasmic vesicle membrane-bounded organelle storage vacuole intracellular anatomical structure vacuole intracellular membrane-bounded organelle protein storage vacuole intracellular organelle cellular anatomical structure organelle plant-type vacuole cytoplasm aleurone grain intracellular vesicle cytoplasmic vesicle vesicle endoplasmic reticulum endomembrane system

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR006045	Cupin 1	Domain
A, B, C	IPR011051	RmlC-like cupin domain superfamily	Homologous Superfamily
A, B, C	IPR050253	Seed Storage and Functional Proteins	Family
A, B, C	IPR014710	RmlC-like jelly roll fold	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.