Crystal Structure of Photosystem I: a Photosynthetic Reaction Center and Core Antenna System from Cyanobacteria
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: OPM
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: MemProtMD
- Membrane Protein Annotation: mpstruc
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| I [auth K] | SCOP2 Family | Photosystem I reaction center subunit X, PsaK | 8021908 | 4002128 | SCOP2 (2022-06-29) |
| I [auth K] | SCOP2 Superfamily | Photosystem I reaction center subunit X, PsaK | 8034288 | 3000859 | SCOP2 (2022-06-29) |
| H [auth J] | SCOP2 Family | Subunit IX of photosystem I reaction centre, PsaJ | 8021907 | 4002101 | SCOP2 (2022-06-29) |
| H [auth J] | SCOP2 Superfamily | Subunit IX of photosystem I reaction centre, PsaJ | 8034287 | 3000824 | SCOP2 (2022-06-29) |
| G [auth I] | SCOP2 Family | Subunit VIII of photosystem I reaction centre, PsaI | 8021906 | 4002098 | SCOP2 (2022-06-29) |
| G [auth I] | SCOP2 Superfamily | Subunit VIII of photosystem I reaction centre, PsaI | 8034286 | 3000819 | SCOP2 (2022-06-29) |
| F | SCOP2 Family | Subunit III of photosystem I reaction centre, PsaF | 8021904 | 4002091 | SCOP2 (2022-06-29) |
| F | SCOP2 Superfamily | Subunit III of photosystem I reaction centre, PsaF | 8034284 | 3000813 | SCOP2 (2022-06-29) |
| E | SCOP2 Family | Photosystem I accessory protein E (PsaE) | 8021902 | 4001749 | SCOP2 (2022-06-29) |
| E | SCOP2 Superfamily | Electron transport accessory proteins | 8034282 | 3000325 | SCOP2 (2022-06-29) |
| D | SCOP2 Family | Photosystem I subunit PsaD | 8021899 | 4003498 | SCOP2 (2022-06-29) |
| D | SCOP2 Superfamily | Photosystem I subunit PsaD | 8034279 | 3000951 | SCOP2 (2022-06-29) |
| C | SCOP2 Family | 7-Fe ferredoxin | 8021897 | 4001227 | SCOP2 (2022-06-29) |
| C | SCOP2 Superfamily | 4Fe-4S ferredoxins | 8034277 | 3000020 | SCOP2 (2022-06-29) |
| B | SCOP2 Family | Photosystem I subunits PsaA/PsaB | 8021894 | 4002118 | SCOP2 (2022-06-29) |
| B | SCOP2 Superfamily | Photosystem I subunits PsaA/PsaB | 8034274 | 3000850 | SCOP2 (2022-06-29) |
| L [auth X] | SCOP2 Family | Subunit PsaX of photosystem I reaction centre | 8021912 | 4002108 | SCOP2 (2022-06-29) |
| L [auth X] | SCOP2 Superfamily | Subunit PsaX of photosystem I reaction centre | 8034292 | 3000838 | SCOP2 (2022-06-29) |
| K [auth M] | SCOP2 Family | Subunit XII of photosystem I reaction centre, PsaM | 8021910 | 4002104 | SCOP2 (2022-06-29) |
| K [auth M] | SCOP2 Superfamily | Subunit XII of photosystem I reaction centre, PsaM | 8034290 | 3000829 | SCOP2 (2022-06-29) |
| J [auth L] | SCOP2 Family | Photosystem I reaction center subunit XI, PsaL | 8021911 | 4002135 | SCOP2 (2022-06-29) |
| J [auth L] | SCOP2 Superfamily | Photosystem I reaction center subunit XI, PsaL | 8034291 | 3000870 | SCOP2 (2022-06-29) |
| A | SCOP2 Family | Photosystem I subunits PsaA/PsaB | 8021892 | 4002118 | SCOP2 (2022-06-29) |
| A | SCOP2 Superfamily | Photosystem I subunits PsaA/PsaB | 8034272 | 3000850 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| I [auth K] | e1jb0K1 | A: Photosystem I reaction center subunit X, PsaK | X: Photosystem I reaction center subunit X, PsaK | H: Photosystem I reaction center subunit X, PsaK | T: PSI_PSAK | F: | ECOD (20:10:01) | |
| H [auth J] | e1jb0J1 | A: Subunit IX of photosystem I reaction centre, PsaJ | X: Subunit IX of photosystem I reaction centre, PsaJ | H: Subunit IX of photosystem I reaction centre, PsaJ | T: PSI_PsaJ | F: | ECOD (20:10:01) | |
| G [auth I] | e1jb0I1 | A: Subunit VIII of photosystem I reaction centre, PsaI | X: Subunit VIII of photosystem I reaction centre, PsaI | H: Subunit VIII of photosystem I reaction centre, PsaI | T: PSI_8 | F: | ECOD (20:10:01) | |
| F | e1jb0F1 | A: Subunit III of photosystem I reaction centre, PsaF | X: Subunit III of photosystem I reaction centre, PsaF | H: Subunit III of photosystem I reaction centre, PsaF | T: PSI_PsaF | F: | ECOD (20:10:01) | |
| E | e1jb0E1 | A: SH3 | X: SH3 | H: SH3 | T: PSI_PsaE | F: | ECOD (20:10:01) | |
| D | e1jb0D1 | A: Photosystem I subunit PsaD | X: Photosystem I subunit PsaD | H: Photosystem I subunit PsaD | T: PsaD | F: | ECOD (20:10:01) | |
| C | e1jb0C1 | A: 4Fe-4S ferredoxin | X: 4Fe-4S ferredoxin | H: 4Fe-4S ferredoxin | T: Fer4, Fer4_10 | F: | ECOD (20:10:01) | |
| B | e1jb0B1 | A: P-loop domains-like | X: P-loop domains-related | H: P-loop containing nucleoside triphosphate hydrolases | T: cNMP_binding | F: | ECOD (20:10:01) | |
| L [auth X] | e1jb0X1 | A: Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain | X: Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain | H: Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain | T: Peptidase_C30 | F: | ECOD (20:10:01) | |
| K [auth M] | e1jb0M1 | A: Subunit XII of photosystem I reaction centre, PsaM | X: Subunit XII of photosystem I reaction centre, PsaM | H: Subunit XII of photosystem I reaction centre, PsaM | T: PsaM | F: | ECOD (20:10:01) | |
| J [auth L] | e1jb0L1 | A: Photosystem I reaction center subunit XI, PsaL | X: Photosystem I reaction center subunit XI, PsaL | H: Photosystem I reaction center subunit XI, PsaL | T: PsaL | F: | ECOD (20:10:01) | |
| A | e1jb0A2 | A: L-aspartase middle domain-like | X: L-aspartase middle domain-like | H: L-aspartase middle domain-like | T: Lyase_aromatic | F: | ECOD (20:10:01) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| H [auth J] | PF01701 | Photosystem I reaction centre subunit IX / PsaJ (PSI_PsaJ) | Photosystem I reaction centre subunit IX / PsaJ | - | Family |
| G [auth I] | PF00796 | Photosystem I reaction centre subunit VIII (PSI_8) | Photosystem I reaction centre subunit VIII | - | Family |
| PF02507 | Photosystem I reaction centre subunit III (PSI_PsaF) | Photosystem I reaction centre subunit III | - | Family | |
| PF02427 | Photosystem I reaction centre subunit IV / PsaE (PSI_PsaE) | Photosystem I reaction centre subunit IV / PsaE | PsaE is a 69 amino acid polypeptide from photosystem I present on the stromal side of the thylakoid membrane [1]. The structure is comprised of a well-defined five-stranded beta-sheet similar to SH3 domains [1]. | Domain | |
| PF02531 | PsaD (PsaD) | PsaD | - | Family | |
| PF12838 | 4Fe-4S dicluster domain (Fer4_7) | 4Fe-4S dicluster domain | Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contai ... | Domain | |
| PF00223 | Photosystem I psaA/psaB protein (PsaA_PsaB) | Photosystem I psaA/psaB protein | - | Family | |
| K [auth M] | PF07465 | Photosystem I protein M (PsaM) (PsaM) | Photosystem I protein M (PsaM) | - | Family |
| J [auth L] | PF02605 | Photosystem I reaction centre subunit XI (PsaL) | Photosystem I reaction centre subunit XI | - | Family |
| PF00223 | Photosystem I psaA/psaB protein (PsaA_PsaB) | Photosystem I psaA/psaB protein | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: OPM OPM Database Homepage
| Chains | External Link | Type | Class | Superfamily | Family |
|---|---|---|---|---|---|
| OPM | Transmembrane | Alpha-helical polytopic | Photosystems | Photosystem I |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
| Chains | Resource Link | Group | Subgroup | Protein |
|---|---|---|---|---|
| mpstruc | TRANSMEMBRANE PROTEINS: ALPHA-HELICAL | Photosystems | Photosystem I |














