1JEN
HUMAN S-ADENOSYLMETHIONINE DECARBOXYLASE
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth B] | 3.30.360.50 | Alpha Beta | 2-Layer Sandwich | Dihydrodipicolinate Reductase | domain 2 | CATH (4.3.0) |
C [auth D] | 3.30.360.50 | Alpha Beta | 2-Layer Sandwich | Dihydrodipicolinate Reductase | domain 2 | CATH (4.3.0) |
B [auth A] | 3.60.90.10 | Alpha Beta | 4-Layer Sandwich | S-adenosylmethionine decarboxylase | S-adenosylmethionine decarboxylase | CATH (4.3.0) |
D [auth C] | 3.60.90.10 | Alpha Beta | 4-Layer Sandwich | S-adenosylmethionine decarboxylase | S-adenosylmethionine decarboxylase | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
B [auth A], D [auth C] | PF01536 | Adenosylmethionine decarboxylase (SAM_decarbox) | Adenosylmethionine decarboxylase | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
A [auth B], C [auth D] | PROTEIN (S-ADENOSYLMETHIONINE DECARBOXYLASE (BETA CHAIN)) |
| ||
B [auth A], D [auth C] | PROTEIN (S-ADENOSYLMETHIONINE DECARBOXYLASE (ALPHA CHAIN)) |
|
InterPro: Protein Family Classification InterPro Database Homepage
Pharos: Disease Associations Pharos Homepage Annotation
Chains | Drug Target   | Associated Disease |
---|---|---|
A [auth B], C [auth D] | P17707 | : |
B [auth A], D [auth C] | P17707 | : 
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
B [auth A], D [auth C] | PYR | AA0127 :  pyruvic acid (Cys) MOD:00136 , pyruvic acid (Ser) MOD:00807 , pyruvic acid MOD:01154 , pyruvic acid (Tyr) MOD:01661 | : 
Structure Motif Annotation: Mechanism and Catalytic Site Atlas M-CSA Database Homepage
Chains | Enzyme Name | Description | Catalytic Residues |
---|---|---|---|
adenosylmethionine decarboxylase (eukaryotic) M-CSA #575 | S-Adenosylmethionine decarboxylase (AdoMetDC) is a critical regulatory enzyme in the polyamine synthetic pathway, and has been the subject of biochemical studies spanning several decades. AdoMetDC is a target for drug design against cancer, parasitic infection, and a variety of hyperproliferative disorders and has several intriguing biochemical features such as an unusual self-cleavage reaction, a covalently bound reactive pyruvoyl group, allosteric activation, and high in vivo degradation rates. AdoMetDC catalyses the removal of the carboxylate group from S-adenosylmethionine (AdoMet) to form (5-deoxy-5-adenosyl)(3-aminopropyl) methylsulfonium salt (dcAdoMet), which is committed to act as the n-propylamine group donor for the synthesis of the polyamines spermidine and spermine from the diamine putrescine. These polyamines have been shown to be involved in the initiation and maintenance of proliferative states, and are crucial for cell growth and differentiation. AdoMetDC is a control point within the polyamine pathway, and its activity is highly regulated during the cell cycle via multiple mechanisms. Deregulation of this pathway has been associated with several types of cancers. The unusual catalytic mechanism of AdoMetDC involves a covalently bound pyruvoyl group instead of the cofactor pyridoxal-5-phosphate (PLP). This pyruvoyl group is generated in a post-translation modification internal serinolysis reaction. | Defined by 5 residues: MET:A-1 [auth B-1]GLU:A-67 [auth B-67]CYS:B-15 [auth A-82]SER:B-162 [auth A-229]HIS:B-176 [auth A-243] EC: 4.1.1.50 (PDB Primary Data) |