1JTZ
CRYSTAL STRUCTURE OF TRANCE/RANKL CYTOKINE.
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth X] | d1jtzx_ | All beta proteins | TNF-like | TNF-like | TNF-like | TRANCE/RANKL cytokine | house mouse (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
B [auth Y] | d1jtzy_ | All beta proteins | TNF-like | TNF-like | TNF-like | TRANCE/RANKL cytokine | house mouse (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
C [auth Z] | d1jtzz_ | All beta proteins | TNF-like | TNF-like | TNF-like | TRANCE/RANKL cytokine | house mouse (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth X] | SCOP2B Superfamily | TNF-like | 8032348 | 3000061 | SCOP2B (2022-06-29) |
B [auth Y] | SCOP2B Superfamily | TNF-like | 8032348 | 3000061 | SCOP2B (2022-06-29) |
C [auth Z] | SCOP2B Superfamily | TNF-like | 8032348 | 3000061 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth X] | TNF | e1jtzX1 | A: beta sandwiches | X: jelly-roll | H: TNF-like (From Topology) | T: TNF-like | F: TNF | ECOD (1.6) |
B [auth Y] | TNF | e1jtzY1 | A: beta sandwiches | X: jelly-roll | H: TNF-like (From Topology) | T: TNF-like | F: TNF | ECOD (1.6) |
C [auth Z] | TNF | e1jtzZ1 | A: beta sandwiches | X: jelly-roll | H: TNF-like (From Topology) | T: TNF-like | F: TNF | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth X] | 2.60.120.40 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
B [auth Y] | 2.60.120.40 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
C [auth Z] | 2.60.120.40 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth X], B [auth Y], C [auth Z] | PF00229 | TNF(Tumour Necrosis Factor) family (TNF) | TNF(Tumour Necrosis Factor) family | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth X], B [auth Y], C [auth Z] | IPR008983 | Tumour necrosis factor-like domain superfamily | Homologous Superfamily |
A [auth X], B [auth Y], C [auth Z] | IPR006052 | Tumour necrosis factor domain | Domain |
A [auth X], B [auth Y], C [auth Z] | IPR017355 | Tumour necrosis factor ligand 10/11 | Family |