1KB0 | pdb_00001kb0

Crystal Structure of Quinohemoprotein Alcohol Dehydrogenase from Comamonas testosteroni

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1kb0a1	All alpha proteins	Cytochrome c	Cytochrome c	Quinoprotein alcohol dehydrogenase, C-terminal domain	Quinoprotein alcohol dehydrogenase, C-terminal domain	(Comamonas testosteroni ) [TaxId: 285 ],	SCOPe (2.08)
A	d1kb0a2	All beta proteins	8-bladed beta-propeller	Quinoprotein alcohol dehydrogenase-like	Quinoprotein alcohol dehydrogenase-like	Quinoprotein alcohol dehydrogenase, N-terminal domain	(Comamonas testosteroni ) [TaxId: 285 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Quinoprotein alcohol dehydrogenase, C-terminal domain	8025602	4002854	SCOP2 (2022-06-29)
A	SCOP2 Family	Quinoprotein alcohol dehydrogenase-like	8025603	4002772	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Cytochrome c	8037981	3000815	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Quinoprotein alcohol dehydrogenase-like	8037982	3001727	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A		e1kb0A1	A: beta-propeller-like	X: beta-propeller	H: 8-bladed	T: PQQ,PQQ_2	F:	ECOD (20:10:01)
A		e1kb0A2	A: Cytochrome c-like	X: Cytochrome c	H: Cytochrome c	T: Cytochrome_CBB3	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.140.10.10	Mainly Beta	8 Propeller	Methanol Dehydrogenase	Chain A	CATH (4.3.0)
A	1.10.760.10	Mainly Alpha	Orthogonal Bundle	Cytochrome Bc1 Complex	Chain D, domain 2	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	quinohemoprotein alcohol dehydrogenase	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding oxidoreductase activity oxidoreductase activity, acting on CH-OH group of donors catalytic activity tetrapyrrole binding heme binding electron transfer activity	-	cellular anatomical structure membrane outer membrane-bounded periplasmic space cell envelope periplasmic space

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR018391	Pyrrolo-quinoline quinone beta-propeller repeat	Repeat
A	IPR001479	Quinoprotein dehydrogenase, conserved site	Conserved Site
A	IPR036909	Cytochrome c-like domain superfamily	Homologous Superfamily
A	IPR002372	Pyrrolo-quinoline quinone repeat domain	Domain
A	IPR017512	PQQ-dependent dehydrogenase, methanol/ethanol family	Family
A	IPR009056	Cytochrome c-like domain	Domain
A	IPR011047	Quinoprotein alcohol dehydrogenase-like superfamily	Homologous Superfamily

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
A	TRO	Parent Component: TRP RESID: AA0542 , AA0543 PSI-MOD : 2'-hydroxy-L-tryptophan MOD:01816 , oxidation of tryptophan to 2'-oxo-L-tryptophan MOD:01817

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.